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L1_008_000M1_scaffold_184

Search features with annotation key words

Displaying items 1-30 of 164 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_184_1
unknown

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comp(119..958)
-----------------
DNA (840bp)
protein (280aa)
hypothetical protein n=1 Tax=Yersinia enterocolitica RepID=UPI0003626CCD
L1_008_000M1_scaffold_184_2
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1336..2505)
-----------------
DNA (1170bp)
protein (390aa)
23S rRNA (Uracil-5-)-methyltransferase RumA n=2 Tax=root RepID=R5E5J1_9FIRM
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:CCX83421.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
23S rRNA (uracil-5-)-methyltransferase RumA
L1_008_000M1_scaffold_184_3
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2689..4173)
-----------------
DNA (1485bp)
protein (495aa)
glutamate synthase (NADH) small subunit (EC:1.4.1.14 1.4.1.13)
Glutamate synthase (NADH) small subunit {ECO:0000313|EMBL:CBL14583.1}; EC=1.4.1.13 {ECO:0000313|EMBL:CBL14583.1};; EC=1.4.1.14 {ECO:0000313|EMBL:CBL14583.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Glutamate synthase (NADH) small subunit n=2 Tax=root RepID=D4L4N8_9FIRM
L1_008_000M1_scaffold_184_4
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4187..8728)
-----------------
DNA (4542bp)
protein (1514aa)
Glutamate synthase domain 2 (EC:1.4.1.13 1.4.1.14)
Glutamate synthase domain 2 {ECO:0000313|EMBL:CBL14584.1}; EC=1.4.1.13 {ECO:0000313|EMBL:CBL14584.1};; EC=1.4.1.14 {ECO:0000313|EMBL:CBL14584.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Glutamate synthase domain 2 n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L4N9_9FIRM
L1_008_000M1_scaffold_184_5
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9348..11441
-----------------
DNA (2094bp)
protein (698aa)
L-glutamine synthetase {ECO:0000313|EMBL:CBL14585.1}; EC=6.3.1.2 {ECO:0000313|EMBL:CBL14585.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L-glutamine synthetase (EC:6.3.1.2)
L-glutamine synthetase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L4P0_9FIRM
L1_008_000M1_scaffold_184_6
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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11575..13275
-----------------
DNA (1701bp)
protein (567aa)
Ammonium transporter n=2 Tax=root RepID=R5E3T7_9FIRM
Ammonium transporter {ECO:0000313|EMBL:CCX83427.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
ammonium transporter
L1_008_000M1_scaffold_184_7
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13597..14193
-----------------
DNA (597bp)
protein (199aa)
ANTAR domain protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DTE1_9FIRM
ANTAR domain protein {ECO:0000313|EMBL:CCX83428.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Response regulator with putative antiterminator output domain
L1_008_000M1_scaffold_184_8
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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14232..15314
-----------------
DNA (1083bp)
protein (361aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
carbamoyl-phosphate synthase small subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase small chain n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DX01_9FIRM
L1_008_000M1_scaffold_184_9
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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15385..19437
-----------------
DNA (4053bp)
protein (1351aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
carbamoyl-phosphate synthase large subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase large subunit n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DT77_9FIRM
L1_008_000M1_scaffold_184_10
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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19440..21062
-----------------
DNA (1623bp)
protein (541aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
CTP synthase (EC:6.3.4.2)
CTP synthase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E5K0_9FIRM
L1_008_000M1_scaffold_184_11
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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21106..22296
-----------------
DNA (1191bp)
protein (397aa)
LL-diaminopimelate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642}; Short=DAP-AT {ECO:0000256|HAMAP-Rule:MF_01642};; Short=DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; Short=LL-DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; EC=2.6.1.83 {ECO:0000256|HAMAP-Rule:MF_01642};; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
LL-diaminopimelate aminotransferase apoenzyme (EC:2.6.1.83)
LL-diaminopimelate aminotransferase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E3U4_9FIRM
L1_008_000M1_scaffold_184_12
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(22449..23825)
-----------------
DNA (1377bp)
protein (459aa)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
glycyl-tRNA synthetase (EC:6.1.1.14)
Glycine--tRNA ligase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DTE7_9FIRM
L1_008_000M1_scaffold_184_13
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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24053..25930
-----------------
DNA (1878bp)
protein (626aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DX05_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83434.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_008_000M1_scaffold_184_14
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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26196..26789
-----------------
DNA (594bp)
protein (198aa)
Predicted metal-dependent hydrolase n=2 Tax=root RepID=R5DT85_9FIRM
Predicted metal-dependent hydrolase {ECO:0000313|EMBL:CCX83435.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Predicted metal-dependent hydrolase
L1_008_000M1_scaffold_184_15
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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26800..27459
-----------------
DNA (660bp)
protein (220aa)
haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E (EC:3.1.3.18)
Haloacid dehalogenase superfamily subfamily IA variant 1 with third motif having Dx(3-4)D or Dx(3-4)E n=2 Tax=root RepID=R5E5K6_9FIRM
Haloacid dehalogenase superfamily subfamily IA variant 1 with third motif having Dx(3-4)D or Dx(3-4)E {ECO:0000313|EMBL:CCX83436.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_008_000M1_scaffold_184_16
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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27464..28093
-----------------
DNA (630bp)
protein (210aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DTF3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83438.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_008_000M1_scaffold_184_17
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(28194..29930)
-----------------
DNA (1737bp)
protein (579aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
phosphoenolpyruvate--protein phosphotransferase (EC:2.7.3.9)
Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DX10_9FIRM
L1_008_000M1_scaffold_184_18
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(29930..30193)
-----------------
DNA (264bp)
protein (88aa)
Phosphotransferase System HPr (HPr) Family n=3 Tax=root RepID=D4L4Q1_9FIRM
Phosphotransferase System HPr (HPr) Family
Phosphotransferase System HPr (HPr) Family {ECO:0000313|EMBL:CBL14596.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_008_000M1_scaffold_184_19
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30341..32266)
-----------------
DNA (1926bp)
protein (642aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E3V9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83447.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
PTS system D-fructose-specific IIA component (F1P-forming), Frc family (TC 4.A.2.1.4)/PTS system D-fructose-specific IIB component (F1P-forming), Frc family (TC 4.A.2.1.4)/PTS system D-fructose-specific IIC component (F1P-forming), Frc family (TC 4.A.2.1.4)
L1_008_000M1_scaffold_184_20
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(32282..33187)
-----------------
DNA (906bp)
protein (302aa)
fructose-1-phosphate kinase (EC:2.7.1.56)
Tagatose-6-phosphate kinase {ECO:0000256|PIRNR:PIRNR000535}; EC=2.7.1.144 {ECO:0000256|PIRNR:PIRNR000535};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Tagatose-6-phosphate kinase n=3 Tax=root RepID=D4L4Q3_9FIRM
L1_008_000M1_scaffold_184_21
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(33165..33932)
-----------------
DNA (768bp)
protein (256aa)
Transcriptional regulators of sugar metabolism n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L4Q4_9FIRM
Transcriptional regulators of sugar metabolism
Transcriptional regulators of sugar metabolism {ECO:0000313|EMBL:CBL14599.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_008_000M1_scaffold_184_22
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(34308..35012)
-----------------
DNA (705bp)
protein (235aa)
cAMP-binding proteins-catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DTG5_9FIRM
cAMP-binding proteins-catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases {ECO:0000313|EMBL:CCX83453.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
cAMP-binding proteins-catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
L1_008_000M1_scaffold_184_23
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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35220..37391
-----------------
DNA (2172bp)
protein (724aa)
anaerobic ribonucleoside-triphosphate reductase (EC:1.17.4.2)
Anaerobic ribonucleoside-triphosphate reductase n=3 Tax=root RepID=D4L4Q6_9FIRM
Anaerobic ribonucleoside-triphosphate reductase {ECO:0000313|EMBL:CCX83455.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_008_000M1_scaffold_184_24
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37391..37927
-----------------
DNA (537bp)
protein (179aa)
Anaerobic ribonucleoside-triphosphate reductase-activating protein {ECO:0000256|PIRNR:PIRNR000368}; EC=1.97.1.- {ECO:0000256|PIRNR:PIRNR000368};; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
anaerobic ribonucleoside-triphosphate reductase activating protein (EC:1.97.1.4)
Anaerobic ribonucleoside-triphosphate reductase-activating protein n=2 Tax=root RepID=R5E3X1_9FIRM
L1_008_000M1_scaffold_184_25
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

38066..38779
-----------------
DNA (714bp)
protein (238aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DX31_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83459.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_008_000M1_scaffold_184_26
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(39333..40538)
-----------------
DNA (1206bp)
protein (402aa)
aspartate kinase, monofunctional class (EC:2.7.2.4)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448, ECO:0000313|EMBL:CBL14604.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Aspartokinase n=2 Tax=root RepID=D4L4Q9_9FIRM
L1_008_000M1_scaffold_184_27
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(40563..41798)
-----------------
DNA (1236bp)
protein (412aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DTH1_9FIRM
L1_008_000M1_scaffold_184_28
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(41844..44297)
-----------------
DNA (2454bp)
protein (818aa)
Membrane carboxypeptidase (penicillin-binding protein) (EC:2.4.1.- 3.4.-.-)
Membrane carboxypeptidase (Penicillin-binding protein) {ECO:0000313|EMBL:CBL14606.1}; EC=2.4.1.- {ECO:0000313|EMBL:CBL14606.1};; EC=3.4.-.- {ECO:0000313|EMBL:CBL14606.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Membrane carboxypeptidase (Penicillin-binding protein) n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L4R1_9FIRM
L1_008_000M1_scaffold_184_29
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

44622..44951
-----------------
DNA (330bp)
protein (110aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L4R2_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL14607.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_008_000M1_scaffold_184_30
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

45162..46112
-----------------
DNA (951bp)
protein (317aa)
putative enoyl-(acyl-carrier-protein) reductase II (EC:1.3.1.-)
Putative enoyl-(Acyl-carrier-protein) reductase II n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L4R3_9FIRM
Putative enoyl-(Acyl-carrier-protein) reductase II {ECO:0000313|EMBL:CCX83477.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Displaying items 1-30 of 164 in total

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