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L1_008_000M1_scaffold_191

Search features with annotation key words

Displaying items 1-30 of 67 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_191_1
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(251..1288)
DNA (1038bp) protein (346aa)
Uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P043_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDS22044.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
hypothetical protein
L1_008_000M1_scaffold_191_2
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1521..2330)
DNA (810bp) protein (270aa)
Transcriptional regulator, DeoR family n=1 Tax=Clostridium sp. SS2/1 RepID=B0P097_9CLOT
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:EDS22045.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
Transcriptional regulators of sugar metabolism
L1_008_000M1_scaffold_191_3
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2387..2800)
DNA (414bp) protein (138aa)
PTS system fructose IIA component n=1 Tax=Clostridium sp. SS2/1 RepID=B0P098_9CLOT
PTS system fructose IIA component {ECO:0000313|EMBL:EDS22046.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
PTS system fructose(mannose)-specific transporter subunit IIA
L1_008_000M1_scaffold_191_4
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2837..3610)
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P099_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDS22047.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
hypothetical protein
L1_008_000M1_scaffold_191_5
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3618..4331)
DNA (714bp) protein (238aa)
Deoxyribose-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202}; Short=DERA {ECO:0000256|HAMAP-Rule:MF_00114};; EC=4.1.2.4 {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202};; 2-deoxy-D-ribose 5-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114}; Phosphodeoxyriboaldolase {ECO:0000256|HAMAP-Rule:MF_00114}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
deoxyribose-phosphate aldolase (EC:4.1.2.4)
Deoxyribose-phosphate aldolase n=1 Tax=Clostridium sp. SS2/1 RepID=B0P0A0_9CLOT
L1_008_000M1_scaffold_191_6
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4632..5465
DNA (834bp) protein (278aa)
HAD hydrolase, family IIB n=1 Tax=Clostridium sp. SS2/1 RepID=B0P0A1_9CLOT
HAD hydrolase, family IIB {ECO:0000313|EMBL:EDS22049.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
HAD family hydrolase
L1_008_000M1_scaffold_191_7
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5584..6930)
DNA (1347bp) protein (449aa)
Uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P040_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDS22050.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
Predicted ATPase (AAA+ superfamily)
L1_008_000M1_scaffold_191_8
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7185..7610)
DNA (426bp) protein (142aa)
PTS system fructose IIA component n=1 Tax=Clostridium sp. SS2/1 RepID=B0P042_9CLOT
PTS system fructose IIA component {ECO:0000313|EMBL:EDS22051.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
phosphotransferase system, mannose/fructose-specific component IIA
L1_008_000M1_scaffold_191_9
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7620..9011)
DNA (1392bp) protein (464aa)
Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosid ase (EC:3.2.1.21)
Glycosyl hydrolase, family 1 n=1 Tax=Clostridium sp. SS2/1 RepID=B0P044_9CLOT
Glycosyl hydrolase, family 1 {ECO:0000313|EMBL:EDS22052.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
L1_008_000M1_scaffold_191_10
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9139..9978)
DNA (840bp) protein (280aa)
PTS system mannose/fructose/sorbose family IID component n=1 Tax=Clostridium sp. SS2/1 RepID=B0P045_9CLOT
PTS system mannose/fructose/sorbose family IID component {ECO:0000313|EMBL:EDS22053.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
PTS system IID component, Man family (TC 4.A.6)
L1_008_000M1_scaffold_191_11
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9980..10816)
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P046_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDS22054.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
PTS sorbose-specific transporter subunit IIC
L1_008_000M1_scaffold_191_12
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10847..11338)
DNA (492bp) protein (164aa)
Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB (EC:2.7.1.69)
PTS system sorbose subfamily IIB component n=1 Tax=Clostridium sp. SS2/1 RepID=B0P047_9CLOT
PTS system sorbose subfamily IIB component {ECO:0000313|EMBL:EDS22055.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
L1_008_000M1_scaffold_191_13
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11365..11784)
DNA (420bp) protein (140aa)
PTS system fructose IIA component n=1 Tax=Clostridium sp. SS2/1 RepID=B0P048_9CLOT
PTS system fructose IIA component {ECO:0000313|EMBL:EDS22056.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
PTS system fructose(mannose)-specific transporter subunit IIA
L1_008_000M1_scaffold_191_14
unknown

Not on your lists

comp(11732..11899)
DNA (168bp) protein (56aa)

This feature has no annotations

L1_008_000M1_scaffold_191_15
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12020..12835)
DNA (816bp) protein (272aa)
UbiC transcription regulator-associated domain protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P049_9CLOT
UbiC transcription regulator-associated domain protein {ECO:0000313|EMBL:EDS22057.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
Transcriptional regulators
L1_008_000M1_scaffold_191_16
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13042..13320
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P050_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDS22058.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
L1_008_000M1_scaffold_191_17
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13345..15771
DNA (2427bp) protein (809aa)
Formate C-acetyltransferase {ECO:0000313|EMBL:EDS22059.1}; EC=2.3.1.54 {ECO:0000313|EMBL:EDS22059.1};; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
pyruvate formate-lyase (EC:2.3.1.54)
Formate C-acetyltransferase n=1 Tax=Clostridium sp. SS2/1 RepID=B0P051_9CLOT
L1_008_000M1_scaffold_191_18
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15777..16688
DNA (912bp) protein (304aa)
glycyl-radical enzyme activating protein family (EC:1.97.1.4)
Radical SAM domain protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P052_9CLOT
Radical SAM domain protein {ECO:0000313|EMBL:EDS22060.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
L1_008_000M1_scaffold_191_19
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16778..20638)
DNA (3861bp) protein (1287aa)
Beta-fructosidases (levanase/invertase) (EC:3.2.1.80)
Repeat protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P053_9CLOT
Repeat protein {ECO:0000313|EMBL:EDS22061.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
L1_008_000M1_scaffold_191_20
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20723..21007)
DNA (285bp) protein (95aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=B0P054_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA32313.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
hypothetical protein
L1_008_000M1_scaffold_191_21
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21023..21859)
DNA (837bp) protein (279aa)
PTS system mannose/fructose/sorbose family IID component n=4 Tax=Clostridiales RepID=B0P055_9CLOT
PTS system mannose/fructose/sorbose family IID component {ECO:0000313|EMBL:EKY22988.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
PTS system IID component, Man family (TC 4.A.6)
L1_008_000M1_scaffold_191_22
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21861..22715)
DNA (855bp) protein (285aa)
Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC n=5 Tax=Clostridiales RepID=D4MVX0_9FIRM
Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC
PTS system sorbose-specific iic component {ECO:0000313|EMBL:CDA32311.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L1_008_000M1_scaffold_191_23
unknown

Not on your lists

comp(22742..23239)
DNA (498bp) protein (166aa)
Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB (EC:2.7.1.69)
Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB {ECO:0000313|EMBL:CBL39535.1}; EC=2.7.1.69 {ECO:0000313|EMBL:CBL39535.1};; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB n=2 Tax=Clostridiales RepID=D4MVW9_9FIRM
L1_008_000M1_scaffold_191_24
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23260..23694)
DNA (435bp) protein (145aa)
Phosphotransferase system, mannose/fructose-specific component IIA (EC:2.7.1.69)
Phosphotransferase system, mannose/fructose-specific component IIA n=5 Tax=Clostridiales RepID=D4MVW8_9FIRM
PTS system fructose IIA component {ECO:0000313|EMBL:CDA32309.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L1_008_000M1_scaffold_191_25
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23857..25176)
DNA (1320bp) protein (440aa)
ABC transporter, solute-binding protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P060_9CLOT
ABC transporter, solute-binding protein {ECO:0000313|EMBL:EDS22068.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)
L1_008_000M1_scaffold_191_26
unknown

Not on your lists

comp(25177..25845)
DNA (669bp) protein (223aa)
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=2 Tax=Clostridiales RepID=D4MVW6_9FIRM
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain {ECO:0000313|EMBL:CBL39532.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L1_008_000M1_scaffold_191_27
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25842..27164)
DNA (1323bp) protein (441aa)
Signal transduction histidine kinase (EC:2.7.13.3)
Histidine kinase n=4 Tax=Clostridiales RepID=B0P062_9CLOT
Histidine kinase {ECO:0000313|EMBL:EKY22982.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
L1_008_000M1_scaffold_191_28
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27177..28157)
DNA (981bp) protein (327aa)
Sugar-binding domain protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P063_9CLOT
Sugar-binding domain protein {ECO:0000313|EMBL:EDS22071.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)
L1_008_000M1_scaffold_191_29
unknown

Not on your lists

comp(28258..30156)
DNA (1899bp) protein (633aa)
NAD+ synthetase (EC:6.3.5.1)
NAD+ synthetase {ECO:0000313|EMBL:CBL39529.1}; EC=6.3.5.1 {ECO:0000313|EMBL:CBL39529.1};; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
NAD+ synthetase n=1 Tax=butyrate-producing bacterium SSC/2 RepID=D4MVW3_9FIRM
L1_008_000M1_scaffold_191_30
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30227..31300)
DNA (1074bp) protein (358aa)
Peptide chain release factor 1 n=4 Tax=Clostridiales RepID=D4MVW2_9FIRM
bacterial peptide chain release factor 1 (bRF-1)
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
Displaying items 1-30 of 67 in total

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