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L1_008_000M1_scaffold_193

Search features with annotation key words

Displaying items 31-60 of 72 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_193_31
Clostridium sp. CAG:411, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34169..35719)
DNA (1551bp) protein (517aa)
Transcriptional regulator LuxR family n=1 Tax=Clostridium sp. CAG:411 RepID=R7I7D5_9CLOT
Transcriptional regulator LuxR family {ECO:0000313|EMBL:CDE47739.1}; TaxID=1262802 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:411.;"
transcriptional regulator, LuxR family protein
L1_008_000M1_scaffold_193_32
Clostridium sp. L2-50, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35941..37902)
DNA (1962bp) protein (654aa)
Putative Ig domain protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VIB6_9CLOT
Putative Ig domain protein {ECO:0000313|EMBL:EDO56975.1}; TaxID=411489 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. L2-50.;"
hypothetical protein
L1_008_000M1_scaffold_193_33
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

38271..39005
DNA (735bp) protein (245aa)
Putative response regulator receiver domain protein n=1 Tax=Roseburia sp. CAG:45 RepID=R6PT50_9FIRM
Putative response regulator receiver domain protein {ECO:0000313|EMBL:CDC12957.1}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
DNA-binding response regulator, LytTr family
L1_008_000M1_scaffold_193_34
Firmicutes bacterium CAG:534, Firmicutes, Bacteria

Not on your lists

comp(39048..41111)
DNA (2064bp) protein (688aa)
two component system histidine kinase/response regulator hybrid protein (EC:2.7.13.3)
Putative response regulator receiver domain protein n=1 Tax=Firmicutes bacterium CAG:534 RepID=R6ZL17_9FIRM
Putative response regulator receiver domain protein {ECO:0000313|EMBL:CDD49213.1}; TaxID=1263027 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:534.;"
L1_008_000M1_scaffold_193_35
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(41129..42073)
DNA (945bp) protein (315aa)
Putative uncharacterized protein n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T2S8_ROSHA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN96461.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L1_008_000M1_scaffold_193_36
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(42101..43156)
DNA (1056bp) protein (352aa)
Putative GTPases (G3E family) n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KRU6_9FIRM
Putative GTPases (G3E family)
Putative GTPases (G3E family) {ECO:0000313|EMBL:CBL09598.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000M1_scaffold_193_37
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(43200..44942)
DNA (1743bp) protein (581aa)
ATP-binding cassette, subfamily B, bacterial n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9IW50_9FIRM
ATP-binding cassette, subfamily B, bacterial {ECO:0000313|EMBL:EOS26083.1}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
ABC-type multidrug transport system, ATPase and permease components
L1_008_000M1_scaffold_193_38
Eubacterium plexicaudatum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

45062..45700
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Eubacterium plexicaudatum ASF492 RepID=N2BDE7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EMZ36360.1}; TaxID=1235802 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium plexicaudatum ASF492.;"
lactate utilization protein B/C
L1_008_000M1_scaffold_193_39
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(45772..46275)
DNA (504bp) protein (168aa)
Transcription elongation factor GreA n=3 Tax=Clostridium RepID=D6DM69_CLOSC
transcription elongation factor GreA
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
L1_008_000M1_scaffold_193_40
Eubacterium sp. 14-2, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(46310..48079)
DNA (1770bp) protein (590aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=1235790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 14-2.;"
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase n=1 Tax=Eubacterium sp. 14-2 RepID=S0JA78_9FIRM
L1_008_000M1_scaffold_193_41
Eubacterium sp. 14-2, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(48190..48600)
DNA (411bp) protein (137aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197};; TaxID=1235790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 14-2.;"
Diaminopimelate epimerase n=2 Tax=Eubacterium sp. 14-2 RepID=S0JCU6_9FIRM
diaminopimelate epimerase
L1_008_000M1_scaffold_193_42
Eubacterium sp. 14-2, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

49083..49946
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. 14-2 RepID=S0IY29_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOT25489.1}; TaxID=1235790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 14-2.;"
AraC-type DNA-binding domain-containing protein, transcriptional regulator
L1_008_000M1_scaffold_193_43
unknown

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comp(49920..50069)
DNA (150bp) protein (50aa)

This feature has no annotations

L1_008_000M1_scaffold_193_44
Eubacterium sp. 14-2, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(50076..50453)
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. 14-2 RepID=S0JEN1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOT25491.1}; TaxID=1235790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 14-2.;"
L1_008_000M1_scaffold_193_45
Lachnospiraceae bacterium A2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

50597..51376
DNA (780bp) protein (260aa)
RNA polymerase sigma factor n=1 Tax=Lachnospiraceae bacterium A2 RepID=R9KIQ5_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=397290 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A2.;"
RNA polymerase, sigma subunit, RpsG/SigG
L1_008_000M1_scaffold_193_46
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(51402..53003)
DNA (1602bp) protein (534aa)
Metallo-beta-lactamase domain protein n=2 Tax=Roseburia RepID=C0FR81_9FIRM
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:EEG94943.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
Predicted exonuclease of the beta-lactamase fold involved in RNA processing
L1_008_000M1_scaffold_193_47
Lachnospiraceae bacterium A2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(53138..53923)
DNA (786bp) protein (262aa)
RNA polymerase sigma factor n=1 Tax=Lachnospiraceae bacterium A2 RepID=R9KI31_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=397290 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A2.;"
FliA/WhiG subfamily RNA polymerase sigma-28 subunit
L1_008_000M1_scaffold_193_48
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(53907..54683)
DNA (777bp) protein (259aa)
Sigma-E processing peptidase SpoIIGA n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9IYI0_9FIRM
Sigma-E processing peptidase SpoIIGA {ECO:0000313|EMBL:EOS23992.1}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
stage II sporulation protein G
L1_008_000M1_scaffold_193_49
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(54997..56679)
DNA (1683bp) protein (561aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HY79_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY29451.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
putative methyl-accepting chemotaxis protein (MCP)
L1_008_000M1_scaffold_193_50
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(56923..57102)
DNA (180bp) protein (60aa)
Putative uncharacterized protein n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KS35_CLOPH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX40666.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L1_008_000M1_scaffold_193_51
Firmicutes bacterium CAG:534, Firmicutes, Bacteria

Not on your lists

comp(57099..57338)
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:534 RepID=R6ZBY9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD45913.1}; TaxID=1263027 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:534.;"
hypothetical protein
L1_008_000M1_scaffold_193_52
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(57408..57977)
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi 12489931 RepID=N9X817_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY92063.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
acetyltransferase, ribosomal protein N-acetylase
L1_008_000M1_scaffold_193_53
Clostridium sp. L2-50, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(58011..60893)
DNA (2883bp) protein (961aa)
SCP-like protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VCX4_9CLOT
SCP-like protein {ECO:0000313|EMBL:EDO58721.1}; TaxID=411489 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. L2-50.;"
peptidase S8 and S53 subtilisin kexin sedolisin
L1_008_000M1_scaffold_193_54
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(61140..61436)
DNA (297bp) protein (99aa)
Transcriptional regulator, XRE family n=2 Tax=Eubacterium rectale RepID=D4JHW7_9FIRM
transcriptional regulator, XRE family
Transcriptional regulator, XRE family {ECO:0000313|EMBL:CBK93214.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L1_008_000M1_scaffold_193_55
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(61436..61789)
DNA (354bp) protein (118aa)
Phage-related protein n=1 Tax=Eubacterium rectale M104/1 RepID=D4JHW8_9FIRM
hypothetical protein
Phage-related protein {ECO:0000313|EMBL:CBK93215.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L1_008_000M1_scaffold_193_56
Treponema socranskii, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(61846..62388)
DNA (543bp) protein (181aa)
Diguanylate cyclase (GGDEF) domain protein n=1 Tax=Treponema socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536 RepID=U2MML5_TRESO
Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:ERF61935.1}; TaxID=1125725 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536.;"
diguanylate cyclase
L1_008_000M1_scaffold_193_57
Lachnospiraceae bacterium A2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(62814..63476)
DNA (663bp) protein (221aa)
thiamine diphosphokinase (EC:2.7.6.2)
Thiamine pyrophosphokinase n=1 Tax=Lachnospiraceae bacterium A2 RepID=R9K6C9_9FIRM
Thiamine pyrophosphokinase {ECO:0000313|EMBL:EOS42020.1}; TaxID=397290 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A2.;"
L1_008_000M1_scaffold_193_58
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(63492..64142)
DNA (651bp) protein (217aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
Ribulose-phosphate 3-epimerase n=1 Tax=Roseburia sp. CAG:182 RepID=R7QTI8_9FIRM
ribulose-phosphate 3-epimerase
L1_008_000M1_scaffold_193_59
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(64156..65034)
DNA (879bp) protein (293aa)
ribosome small subunit-dependent GTPase A (EC:3.6.1.-)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820, ECO:0000313|EMBL:CBL09723.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Putative ribosome biogenesis GTPase RsgA n=2 Tax=Roseburia RepID=D4KS71_9FIRM
L1_008_000M1_scaffold_193_60
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(65043..67073)
DNA (2031bp) protein (677aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:45 RepID=R6PVM7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC13837.1}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
serine/threonine protein kinase, bacterial
Displaying items 31-60 of 72 in total

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