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L1_008_000M1_scaffold_200

Search features with annotation key words

Displaying items 1-30 of 71 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_200_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2..676
DNA (675bp) protein (225aa)
ATP synthase, F1 beta subunit (EC:3.6.3.14)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
ATP synthase subunit beta n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZXW5_BIFLJ
L1_008_000M1_scaffold_200_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

676..969
DNA (294bp) protein (98aa)
F0F1-type ATP synthase epsilon subunit n=12 Tax=Bifidobacterium RepID=B3DTU9_BIFLD
ATP synthase subunit epsilon
ATP synthase, delta/epsilon subunit, beta-sandwich domain protein {ECO:0000313|EMBL:EEQ54412.1}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
L1_008_000M1_scaffold_200_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1057..1827
DNA (771bp) protein (257aa)
Endonuclease NucS {ECO:0000256|HAMAP-Rule:MF_00722}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00722};; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
Endonuclease NucS n=19 Tax=Bifidobacterium RepID=NUCS_BIFLD
hypothetical protein
L1_008_000M1_scaffold_200_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1873..2862)
DNA (990bp) protein (330aa)
Peptidyl-prolyl cis-trans isomerase n=16 Tax=Bifidobacterium RepID=E4R0G1_BIFLM
peptidyl-prolyl cis-trans isomerase
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU004231}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L1_008_000M1_scaffold_200_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2943..4022
DNA (1080bp) protein (360aa)
Uncharacterized protein n=16 Tax=Bifidobacterium RepID=B3DTU6_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIW43283.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L1_008_000M1_scaffold_200_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4022..5029
DNA (1008bp) protein (336aa)
Uncharacterized protein n=7 Tax=Bifidobacterium longum RepID=B3DTU5_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIW43284.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L1_008_000M1_scaffold_200_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5278..6252
DNA (975bp) protein (325aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum (strain NCC 2705) RepID=Q8G7B9_BIFLO
thioredoxin
Uncharacterized protein {ECO:0000313|EMBL:EEQ54407.1}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
L1_008_000M1_scaffold_200_8
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6337..6963)
DNA (627bp) protein (209aa)
Uncharacterized protein conserved in bacteria n=11 Tax=Bifidobacterium RepID=D6DA64_BIFLN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KEY23493.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L1_008_000M1_scaffold_200_9
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7502..7891
DNA (390bp) protein (130aa)
Endoribonuclease L-PSP, putative n=7 Tax=Bifidobacterium RepID=D6DA63_BIFLN
tdcF; tdcf
TdcF {ECO:0000313|EMBL:CCY95318.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L1_008_000M1_scaffold_200_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7998..8939
DNA (942bp) protein (314aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase n=2 Tax=Bifidobacterium longum RepID=S3ENQ9_BIFLN
hypothetical protein
Acyltransferase {ECO:0000313|EMBL:EIJ30816.1}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
L1_008_000M1_scaffold_200_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9033..10034
DNA (1002bp) protein (334aa)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00394}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=15 Tax=Bacteria RepID=GPDA_BIFLO
glycerol-3-phosphate dehydrogenase
L1_008_000M1_scaffold_200_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10210..11397
DNA (1188bp) protein (396aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
D-alanine--D-alanine ligase n=12 Tax=Bifidobacterium RepID=DDL_BIFLO
D-alanine-D-alanine ligase
L1_008_000M1_scaffold_200_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11650..12816
DNA (1167bp) protein (389aa)
Spermidine/putrescine-binding periplasmic protein n=13 Tax=Bifidobacterium RepID=B3DTT8_BIFLD
ABC transporter substrate-binding protein
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KEY23488.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L1_008_000M1_scaffold_200_14
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12828..13778
DNA (951bp) protein (317aa)
Spermidine/putrescine ABC transporter permease protein n=14 Tax=Bifidobacterium longum RepID=B3DTT7_BIFLD
ABC transporter permease
ABC transporter permease {ECO:0000313|EMBL:KEY23487.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L1_008_000M1_scaffold_200_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13775..14629
DNA (855bp) protein (285aa)
ABC-type spermidine/putrescine transport system permease component II n=10 Tax=Bifidobacterium longum RepID=B3DTT6_BIFLD
potC; potc
Possible permease of ABC transporter {ECO:0000313|EMBL:BAP82946.1}; TaxID=216816 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum.;"
L1_008_000M1_scaffold_200_16
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14634..15911
DNA (1278bp) protein (426aa)
ABC-type spermidine/putrescine transport systems, ATPase components n=11 Tax=Bifidobacterium longum RepID=D6DA57_BIFLN
potA; pota
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEI81718.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
L1_008_000M1_scaffold_200_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16227..17258
DNA (1032bp) protein (344aa)
Predicted metal-dependent membrane protease n=9 Tax=Bifidobacterium longum RepID=D6DA56_BIFLN
hypothetical protein
Predicted metal-dependent membrane protease {ECO:0000313|EMBL:CBK71059.1}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
L1_008_000M1_scaffold_200_18
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17297..18094)
DNA (798bp) protein (266aa)
Small-conductance mechanosensitive channel n=10 Tax=Bifidobacterium longum RepID=D6DA55_BIFLN
mscS; mscs
Transporter, small conductance mechanosensitive ion channel MscS family protein {ECO:0000313|EMBL:EEQ54396.1}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
L1_008_000M1_scaffold_200_19
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18175..19608)
DNA (1434bp) protein (478aa)
Aspartate ammonia-lyase (EC:4.3.1.1)
Aspartate ammonia-lyase {ECO:0000313|EMBL:CBK71057.1}; EC=4.3.1.1 {ECO:0000313|EMBL:CBK71057.1};; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
Aspartate ammonia-lyase n=7 Tax=Bacteria RepID=E8MGP2_BIFL2
L1_008_000M1_scaffold_200_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19726..20457)
DNA (732bp) protein (244aa)
AcrR-type transcriptional regulator n=15 Tax=Bifidobacterium RepID=B3DTT1_BIFLD
transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EIJ22270.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
L1_008_000M1_scaffold_200_21
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20548..21954)
DNA (1407bp) protein (469aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum D2957 RepID=S3DRP1_BIFLN
hypothetical protein
PF11187 family protein {ECO:0000313|EMBL:EIJ30818.1}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
L1_008_000M1_scaffold_200_22
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22276..22770)
DNA (495bp) protein (165aa)
Methylated DNA-protein cysteine methyltransferase n=16 Tax=Bifidobacterium RepID=B3DTS9_BIFLD
methyltransferase
Cysteine methyltransferase {ECO:0000313|EMBL:KEY31738.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L1_008_000M1_scaffold_200_23
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23589..24485
DNA (897bp) protein (299aa)
Uncharacterized protein n=3 Tax=Bifidobacterium RepID=Q8G7D5_BIFLO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAN24173.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L1_008_000M1_scaffold_200_24
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24352..25629)
DNA (1278bp) protein (426aa)
Major facilitator superfamily MFS_1 n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=B7GU19_BIFLS
MFS transporter {ECO:0000313|EMBL:KEY28788.1}; TaxID=1457183 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis EK3.;"
hypothetical protein
L1_008_000M1_scaffold_200_25
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25851..26867)
DNA (1017bp) protein (339aa)
Carbohydrate kinase n=2 Tax=Bifidobacterium longum RepID=B7GU20_BIFLS
sugar kinase
Sugar kinase {ECO:0000313|EMBL:KEY23476.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L1_008_000M1_scaffold_200_26
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


27271..27465
DNA (195bp) protein (65aa)
50S ribosomal protein L28 n=18 Tax=Bifidobacterium RepID=RL28_BIFLD
50S ribosomal protein L28
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=565042 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 /; JCM 1217 / NCTC 11818 / E194b).;"
L1_008_000M1_scaffold_200_27
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27565..30408
DNA (2844bp) protein (948aa)
Putative DNA/RNA helicase n=1 Tax=Bifidobacterium longum E18 RepID=V6XWM9_BIFLN
Putative DNA/RNA helicase {ECO:0000313|EMBL:ESV32896.1}; TaxID=1322347 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum E18.;"
recG; ATP-dependent DNA helicase
L1_008_000M1_scaffold_200_28
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30635..31246
DNA (612bp) protein (204aa)
Uncharacterized protein n=12 Tax=Bifidobacterium RepID=Q8G7D9_BIFLO
n6-adenine-specific methylase
Uncharacterized protein {ECO:0000313|EMBL:CCY95336.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L1_008_000M1_scaffold_200_29
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31270..32085)
DNA (816bp) protein (272aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
tRNA (guanine-N(1)-)-methyltransferase n=14 Tax=Bifidobacterium RepID=TRMD_BIFLO
trmD; trmd
L1_008_000M1_scaffold_200_30
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32159..33805
DNA (1647bp) protein (549aa)
Possible protease or peptidase n=10 Tax=Bifidobacterium RepID=Q8G7E0_BIFLO
Collagenase {ECO:0000313|EMBL:KEY23471.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
protease or peptidase
Displaying items 1-30 of 71 in total

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