ggKbase home page

L1_008_000M1_scaffold_233

Search features with annotation key words

Displaying items 31-60 of 63 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_233_31
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32433..33998)
DNA (1566bp) protein (522aa)
Flagellar hook-basal body protein n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RRF3_9FIRM
Flagellar hook-basal body protein {ECO:0000313|EMBL:CDC45636.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
fagellar hook-basal body proteins
L1_008_000M1_scaffold_233_32
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34080..34484)
DNA (405bp) protein (135aa)
Flagellar operon protein n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RRE8_9FIRM
Flagellar operon protein {ECO:0000313|EMBL:CDC45631.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
flagellar operon protein
L1_008_000M1_scaffold_233_33
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34504..35178)
DNA (675bp) protein (225aa)
Flagellar hook capping protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JX25_9FIRM
Flagellar hook capping protein
Flagellar hook capping protein {ECO:0000313|EMBL:CBK97644.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_233_34
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35215..36708)
DNA (1494bp) protein (498aa)
Flagellar hook-length control protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JX26_9FIRM
Flagellar hook-length control protein
Flagellar hook-length control protein {ECO:0000313|EMBL:CBK97645.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_233_35
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36866..37318)
DNA (453bp) protein (151aa)
Flagellar export protein FliJ n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JX27_9FIRM
flagellar export protein FliJ
Flagellar export protein FliJ {ECO:0000313|EMBL:CBK97646.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_233_36
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37331..38635)
DNA (1305bp) protein (435aa)
type III secretion system ATPase, FliI/YscN (EC:3.6.3.14 3.6.3.15)
Type III secretion system ATPase, FliI/YscN {ECO:0000313|EMBL:CBK97647.1}; EC=3.6.3.14 {ECO:0000313|EMBL:CBK97647.1};; EC=3.6.3.15 {ECO:0000313|EMBL:CBK97647.1};; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Type III secretion system ATPase, FliI/YscN n=5 Tax=root RepID=D4JX28_9FIRM
L1_008_000M1_scaffold_233_37
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38661..39599)
DNA (939bp) protein (313aa)
Putative ATP synthase F1, delta subunit n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MPE7_9FIRM
Putative ATP synthase F1, delta subunit {ECO:0000313|EMBL:EDS00537.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
flagellar assembly protein FliH/Type III secretion system HrpE
L1_008_000M1_scaffold_233_38
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(39621..40625)
DNA (1005bp) protein (335aa)
Flagellar motor switch protein FliG n=4 Tax=root RepID=D4JX29_9FIRM
flagellar motor switch protein FliG
Flagellar motor switch protein FliG {ECO:0000313|EMBL:CBK97648.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_233_39
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(40653..42281)
DNA (1629bp) protein (543aa)
Flagellar basal-body M-ring protein/flagellar hook-basal body protein (FliF) n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JX30_9FIRM
Flagellar basal-body M-ring protein/flagellar hook-basal body protein (FliF) {ECO:0000313|EMBL:CBK97649.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF)
L1_008_000M1_scaffold_233_40
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(42323..42628)
DNA (306bp) protein (102aa)
Flagellar hook-basal body complex protein FliE n=2 Tax=root RepID=D4JX31_9FIRM
flagellar hook-basal body complex protein FliE
Flagellar hook-basal body complex protein FliE {ECO:0000256|HAMAP-Rule:MF_00724, ECO:0000256|SAAS:SAAS00116622}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_233_41
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(42654..43157)
DNA (504bp) protein (168aa)
Flagellar basal-body rod protein FlgC n=3 Tax=root RepID=D4JX32_9FIRM
flagellar basal-body rod protein FlgC
Flagellar basal-body rod protein FlgC {ECO:0000256|RuleBase:RU362062}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
L1_008_000M1_scaffold_233_42
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(43399..43782)
DNA (384bp) protein (128aa)
Flagellar basal body rod protein FlgB n=5 Tax=root RepID=D4JX33_9FIRM
flagellar basal-body rod protein FlgB
Flagellar basal body rod protein FlgB {ECO:0000256|PIRNR:PIRNR002889}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L1_008_000M1_scaffold_233_43
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(44119..44844)
DNA (726bp) protein (242aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JX34_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK97653.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_233_44
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

45206..45841
DNA (636bp) protein (212aa)
hypothetical protein n=1 Tax=Eubacterium siraeum RepID=UPI000377BE42
Type IV pilus assembly protein PilZ {ECO:0000313|EMBL:EDS00544.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
type IV pilus assembly PilZ
L1_008_000M1_scaffold_233_45
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

45910..47922
DNA (2013bp) protein (671aa)
Diguanylate cyclase (GGDEF) domain protein n=2 Tax=root PF5_9FIRM">RepID=B0MPF5_9FIRM
Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:EDS00545.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
PAS domain S-box/diguanylate cyclase (GGDEF) domain
L1_008_000M1_scaffold_233_46
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

48038..48856
DNA (819bp) protein (273aa)
ATPases involved in chromosome partitioning n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JX36_9FIRM
ATPases involved in chromosome partitioning
ATPases involved in chromosome partitioning {ECO:0000313|EMBL:CBK97655.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_233_47

Not on your lists

48917..49426
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=human gut metagenome RepID=K1T186_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC59845.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_008_000M1_scaffold_233_48
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(50335..52035)
DNA (1701bp) protein (567aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JX37_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK97656.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_233_49
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(52278..53348)
DNA (1071bp) protein (357aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JX38_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK97657.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_233_50
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

53878..54438
DNA (561bp) protein (187aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JX39_9FIRM
RNA polymerase sigma factor, sigma-70 family
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:CBK97658.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_233_51
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

54463..55146
DNA (684bp) protein (228aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JX40_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK97659.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_233_52
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

55373..56704
DNA (1332bp) protein (444aa)
Endoglucanase A n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RRB0_9FIRM
Endoglucanase A {ECO:0000313|EMBL:CDC45581.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Endoglucanase
L1_008_000M1_scaffold_233_53

Not on your lists

56797..57042
DNA (246bp) protein (82aa)
Uncharacterized protein n=2 Tax=root RepID=K1U058_9ZZZZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKC64906.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_008_000M1_scaffold_233_54
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

57471..58079
DNA (609bp) protein (203aa)
Cell wall-associated hydrolases (Invasion-associated proteins) n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JX42_9FIRM
Cell wall-associated hydrolases (invasion-associated proteins)
Cell wall-associated hydrolases (Invasion-associated proteins) {ECO:0000313|EMBL:CBK97661.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_233_55
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

58344..59150
DNA (807bp) protein (269aa)
NlpC/P60 family protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MKT3_9FIRM
NlpC/P60 family protein {ECO:0000313|EMBL:EDS01766.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Cell wall-associated hydrolases (invasion-associated proteins)
L1_008_000M1_scaffold_233_56
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

59515..62970
DNA (3456bp) protein (1152aa)
Beta-galactosidase/beta-glucuronidase n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6S243_9FIRM
Beta-galactosidase/beta-glucuronidase {ECO:0000313|EMBL:CDC49396.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Beta-galactosidase/beta-glucuronidase
L1_008_000M1_scaffold_233_57
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

63942..64355
DNA (414bp) protein (138aa)
ADP-ribose pyrophosphatase n=2 Tax=root RepID=D4JX43_9FIRM
ADP-ribose pyrophosphatase
ADP-ribose pyrophosphatase {ECO:0000313|EMBL:CBK97662.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_233_58
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

64404..65654
DNA (1251bp) protein (417aa)
folylpolyglutamate synthase/dihydrofolate synthase (EC:6.3.2.17 6.3.2.12)
Folylpolyglutamate synthase/dihydrofolate synthase {ECO:0000313|EMBL:CBK97663.1}; EC=6.3.2.12 {ECO:0000313|EMBL:CBK97663.1};; EC=6.3.2.17 {ECO:0000313|EMBL:CBK97663.1};; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Folylpolyglutamate synthase/dihydrofolate synthase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JX44_9FIRM
L1_008_000M1_scaffold_233_59
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

66159..67487
DNA (1329bp) protein (443aa)
Uncharacterized conserved protein n=2 Tax=root RepID=R6RKK8_9FIRM
Uncharacterized conserved protein {ECO:0000313|EMBL:CDC43541.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
hypothetical protein
L1_008_000M1_scaffold_233_60
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

67855..69009
DNA (1155bp) protein (385aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JX49_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK97668.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Displaying items 31-60 of 63 in total

View Taxonomy