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L1_008_000M1_scaffold_233

Search features with annotation key words

Displaying items 1-30 of 63 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_233_1
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(640..1305)
DNA (666bp) protein (222aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JWZ5_9FIRM
RNA polymerase sigma factor, sigma-70 family
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:CBK97614.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_233_2
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1302..1745)
DNA (444bp) protein (148aa)
anti-sigma F factor (EC:2.7.11.1)
Anti-sigma F factor {ECO:0000313|EMBL:EDS00499.1}; EC=2.7.11.1 {ECO:0000313|EMBL:EDS00499.1};; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Anti-sigma F factor n=2 Tax=Eubacterium siraeum RepID=D4MNL6_9FIRM
L1_008_000M1_scaffold_233_3
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2289..2618
DNA (330bp) protein (110aa)
Uncharacterized protein n=4 Tax=Eubacterium RepID=B0MPB1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDC48106.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L1_008_000M1_scaffold_233_4
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2615..3394
DNA (780bp) protein (260aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MNL4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL35347.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L1_008_000M1_scaffold_233_5
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3435..3821
DNA (387bp) protein (129aa)
Uncharacterized conserved protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JWZ9_9FIRM
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CBK97618.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_233_6
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3823..4758
DNA (936bp) protein (312aa)
Glycosyltransferases involved in cell wall biogenesis n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JX00_9FIRM
Glycosyltransferases involved in cell wall biogenesis
Glycosyltransferases involved in cell wall biogenesis {ECO:0000313|EMBL:CBK97619.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_233_7
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4758..7520
DNA (2763bp) protein (921aa)
Predicted membrane protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JX01_9FIRM
Predicted membrane protein {ECO:0000313|EMBL:CBK97620.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Predicted membrane protein
L1_008_000M1_scaffold_233_8
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7517..8290
DNA (774bp) protein (258aa)
pantothenate kinase, type III (EC:2.7.1.33)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Type III pantothenate kinase n=4 Tax=root RepID=D4MNL0_9FIRM
L1_008_000M1_scaffold_233_9
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8430..9050
DNA (621bp) protein (207aa)
Thiamine transporter protein (Thia_YuaJ) n=2 Tax=root RepID=R6RS19_9FIRM
Thiamine transporter protein (Thia_YuaJ) {ECO:0000313|EMBL:CDC48119.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Thiamine transporter protein (Thia_YuaJ).
L1_008_000M1_scaffold_233_10
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9069..10718
DNA (1650bp) protein (550aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022, ECO:0000313|EMBL:CBL35341.1};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
glutamyl-tRNA synthetase, bacterial family (EC:6.1.1.17)
Glutamate--tRNA ligase n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MNK8_9FIRM
L1_008_000M1_scaffold_233_11
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11418..12323)
DNA (906bp) protein (302aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MNK7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL35340.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L1_008_000M1_scaffold_233_12
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12541..15681)
DNA (3141bp) protein (1047aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RHN7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC48393.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
hypothetical protein
L1_008_000M1_scaffold_233_13
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15706..17217)
DNA (1512bp) protein (504aa)
Predicted polymerase, most proteins contain PALM domain, HD hydrolase domain and Zn-ribbon domain n=2 Tax=root RepID=D4JX08_9FIRM
Predicted polymerase, most proteins contain PALM domain, HD hydrolase domain and Zn-ribbon domain
Predicted polymerase, most proteins contain PALM domain, HD hydrolase domain and Zn-ribbon domain {ECO:0000313|EMBL:CBK97627.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_233_14

Not on your lists

comp(17267..17743)
DNA (477bp) protein (159aa)
protein CheD (EC:3.5.1.44)
Chemoreceptor glutamine deamidase CheD n=1 Tax=human gut metagenome RepID=K1T0F2_9ZZZZ
Chemoreceptor glutamine deamidase CheD {ECO:0000313|EMBL:EKC61149.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_008_000M1_scaffold_233_15
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17740..18363)
DNA (624bp) protein (208aa)
Chemotaxis protein CheC inhibitor of MCP methylation n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6SP53_9FIRM
Chemotaxis protein CheC inhibitor of MCP methylation {ECO:0000313|EMBL:CDC48387.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Chemotaxis protein CheC, inhibitor of MCP methylation
L1_008_000M1_scaffold_233_16
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18471..19199)
DNA (729bp) protein (243aa)
Fagellar hook-basal body proteins n=4 Tax=root RepID=D4JX10_9FIRM
fagellar hook-basal body proteins
Fagellar hook-basal body proteins {ECO:0000313|EMBL:CBL35335.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L1_008_000M1_scaffold_233_17
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19224..19964)
DNA (741bp) protein (247aa)
Flagellar hook-basal body protein n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RHM9_9FIRM
Flagellar hook-basal body protein {ECO:0000313|EMBL:CDC48383.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
fagellar hook-basal body proteins
L1_008_000M1_scaffold_233_18
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20075..20830)
DNA (756bp) protein (252aa)
RNA polymerase sigma factor, FliA/WhiG family/RNA polymerase sigma factor, sigma-70 family n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JX11_9FIRM
RNA polymerase sigma factor, FliA/WhiG family/RNA polymerase sigma factor, sigma-70 family
RNA polymerase sigma factor, FliA/WhiG family {ECO:0000313|EMBL:EDS00516.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
L1_008_000M1_scaffold_233_19
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20870..22936)
DNA (2067bp) protein (689aa)
Flagellar biosynthesis protein FlhA n=2 Tax=root RepID=D4JX12_9FIRM
Flagellar biosynthesis protein FlhA {ECO:0000313|EMBL:CBK97631.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
flagellar biosynthesis protein FlhA
L1_008_000M1_scaffold_233_20
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23371..24378)
DNA (1008bp) protein (336aa)
Flagellar biosynthetic protein FlhB n=2 Tax=root RepID=R6RKT5_9FIRM
Flagellar biosynthetic protein FlhB {ECO:0000313|EMBL:CDC48375.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
flagellar biosynthetic protein FlhB
L1_008_000M1_scaffold_233_21
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24455..25243)
DNA (789bp) protein (263aa)
Flagellar biosynthesis pathway, component FliR n=4 Tax=root RepID=D4JX14_9FIRM
Flagellar biosynthesis pathway, component FliR
Putative flagellar biosynthetic protein FliR {ECO:0000313|EMBL:EDS00519.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
L1_008_000M1_scaffold_233_22
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25240..25530)
DNA (291bp) protein (97aa)
Putative flagellar biosynthetic protein FliQ n=2 Tax=Eubacterium RepID=B0MPD0_9FIRM
Putative flagellar biosynthetic protein FliQ {ECO:0000313|EMBL:EDS00520.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
flagellar biosynthetic protein FliQ
L1_008_000M1_scaffold_233_23
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25542..26465)
DNA (924bp) protein (308aa)
Flagellar biosynthetic protein FliP n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JX15_9FIRM
flagellar biosynthetic protein FliP
Flagellar biosynthetic protein FliP {ECO:0000313|EMBL:CBK97634.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_233_24
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26462..26935)
DNA (474bp) protein (158aa)
Flagellar biosynthetic protein FliO n=2 Tax=root RepID=D4JX16_9FIRM
flagellar biosynthetic protein FliO
Flagellar biosynthetic protein FliO {ECO:0000313|EMBL:CBK97635.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_233_25
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26935..27297)
DNA (363bp) protein (121aa)
Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=4 Tax=root RepID=D4JX17_9FIRM
Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
Response regulator receiver domain protein {ECO:0000313|EMBL:EDS00523.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
L1_008_000M1_scaffold_233_26
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27338..28615)
DNA (1278bp) protein (426aa)
Chemotaxis protein CheC, inhibitor of MCP methylation n=2 Tax=root RepID=D4JX18_9FIRM
Chemotaxis protein CheC, inhibitor of MCP methylation
Chemotaxis protein CheC, inhibitor of MCP methylation {ECO:0000313|EMBL:CBK97637.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_233_27
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28626..29585)
DNA (960bp) protein (320aa)
Flagellar motor switch protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JX19_9FIRM
Flagellar motor switch protein
Flagellar motor switch protein {ECO:0000313|EMBL:CBK97638.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_233_28
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29648..30667)
DNA (1020bp) protein (340aa)
Flagellar motor protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JX20_9FIRM
Flagellar motor protein
Flagellar motor protein {ECO:0000313|EMBL:CBK97639.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_233_29

Not on your lists

comp(30794..31597)
DNA (804bp) protein (268aa)
MotA/TolQ/ExbB proton channel (Fragment) n=1 Tax=human gut metagenome RepID=K1THI6_9ZZZZ
MotA/TolQ/ExbB proton channel {ECO:0000313|EMBL:EKC72517.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
MotA/TolQ/ExbB proton channel
L1_008_000M1_scaffold_233_30
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31623..31826)
DNA (204bp) protein (68aa)
Uncharacterized protein, possibly involved in motility n=4 Tax=Eubacterium RepID=D4JX21_9FIRM
Uncharacterized protein, possibly involved in motility
Uncharacterized protein possibly involved in motility {ECO:0000313|EMBL:CDC48355.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Displaying items 1-30 of 63 in total

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