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L1_008_000M1_scaffold_280

Search features with annotation key words

Displaying items 1-30 of 69 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_280_1
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..183)
DNA (183bp) protein (61aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=R6BWB6_9FIRM
Protein of unknown function (DUF964).
Uncharacterized protein {ECO:0000313|EMBL:CDA57467.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000M1_scaffold_280_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(200..1960)
DNA (1761bp) protein (587aa)
Uncharacterized protein n=3 Tax=Roseburia intestinalis RepID=C7GD41_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL08284.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000M1_scaffold_280_3
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1941..2207)
DNA (267bp) protein (89aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7GD42_9FIRM
Protein of unknown function (DUF1292).
Uncharacterized protein {ECO:0000313|EMBL:CBL12810.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000M1_scaffold_280_4
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2272..2706)
DNA (435bp) protein (145aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Putative Holliday junction resolvase n=3 Tax=Roseburia RepID=D4KN30_9FIRM
conserved hypothetical protein TIGR00250
L1_008_000M1_scaffold_280_5
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2714..2986)
DNA (273bp) protein (91aa)
UPF0297 protein BN484_00872 n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AZV2_9FIRM
UPF0297 protein BN484_00872 {ECO:0000256|HAMAP-Rule:MF_01507}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L1_008_000M1_scaffold_280_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3042..4349)
DNA (1308bp) protein (436aa)
MiaB-like tRNA modifying enzyme (EC:1.3.1.74)
MiaB-like tRNA modifying enzyme {ECO:0000313|EMBL:CBL12807.1}; EC=1.3.1.74 {ECO:0000313|EMBL:CBL12807.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
MiaB-like tRNA modifying enzyme n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KZL7_9FIRM
L1_008_000M1_scaffold_280_7
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4449..4679
DNA (231bp) protein (77aa)
PTS HPr component phosphorylation site n=4 Tax=Roseburia RepID=D4KN28_9FIRM
PTS HPr component phosphorylation site.
Uncharacterized protein {ECO:0000313|EMBL:EEV00269.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L1_008_000M1_scaffold_280_8
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4851..6032)
DNA (1182bp) protein (394aa)
Probable tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094284}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094270};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; Thiamine biosynthesis protein ThiI {ECO:0000256|HAMAP-Rule:MF_00021}; tRNA 4-thiouridine synthase {ECO:0000256|HAMAP-Rule:MF_00021}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Probable tRNA sulfurtransferase n=3 Tax=Roseburia RepID=D4KZL5_9FIRM
thiazole biosynthesis/tRNA modification protein ThiI
L1_008_000M1_scaffold_280_9
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6058..7212)
DNA (1155bp) protein (385aa)
Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes (EC:2.8.1.7)
Aminotransferase, class V n=2 Tax=Roseburia RepID=C7GD48_9FIRM
Aminotransferase, class V {ECO:0000313|EMBL:EEV00271.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L1_008_000M1_scaffold_280_10
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7379..8134)
DNA (756bp) protein (252aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BEG1_9FIRM
hypothetical protein
L1_008_000M1_scaffold_280_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8176..9159)
DNA (984bp) protein (328aa)
[LSU ribosomal protein L11P]-lysine N-methyltransferase (EC:2.1.1.-)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Ribosomal protein L11 methyltransferase n=3 Tax=Roseburia RepID=D4KN25_9FIRM
L1_008_000M1_scaffold_280_12
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9540..9719
DNA (180bp) protein (60aa)
Uncharacterized protein n=3 Tax=Roseburia RepID=C7GD51_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA57454.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000M1_scaffold_280_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9772..10512)
DNA (741bp) protein (247aa)
amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-) (EC:3.6.3.21)
Amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-) {ECO:0000313|EMBL:CBL08275.1}; EC=3.6.3.21 {ECO:0000313|EMBL:CBL08275.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-) n=4 Tax=Roseburia RepID=D4KN23_9FIRM
L1_008_000M1_scaffold_280_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10502..12043)
DNA (1542bp) protein (514aa)
ABC transporter, permease protein n=2 Tax=Roseburia intestinalis RepID=C7GD55_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EEV00242.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family
L1_008_000M1_scaffold_280_15
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12149..12916)
DNA (768bp) protein (256aa)
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase (EC:3.2.2.9)
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 {ECO:0000256|SAAS:SAAS00131282}; EC=3.2.2.9 {ECO:0000256|SAAS:SAAS00064821, ECO:0000313|EMBL:CBL12800.1};; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase {ECO:0000256|SAAS:SAAS00064819}; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 {ECO:0000256|SAAS:SAAS00131176}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KZL0_9FIRM
L1_008_000M1_scaffold_280_16
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13110..13589
DNA (480bp) protein (160aa)
LuxS protein involved in autoinducer AI2 synthesis (EC:4.4.1.21)
S-ribosylhomocysteine lyase {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059609}; EC=4.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059628};; AI-2 synthesis protein {ECO:0000256|HAMAP-Rule:MF_00091}; Autoinducer-2 production protein LuxS {ECO:0000256|HAMAP-Rule:MF_00091}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
S-ribosylhomocysteine lyase n=4 Tax=Roseburia RepID=D4KN19_9FIRM
L1_008_000M1_scaffold_280_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13752..14594)
DNA (843bp) protein (281aa)
Esterase/lipase n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KN18_9FIRM
Esterase/lipase
Esterase/lipase {ECO:0000313|EMBL:CBL08270.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000M1_scaffold_280_18
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14633..15238)
DNA (606bp) protein (202aa)
phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein (EC:2.7.1.39 3.1.3.3)
Phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein {ECO:0000313|EMBL:CBL08269.1}; EC=2.7.1.39 {ECO:0000313|EMBL:CBL08269.1};; EC=3.1.3.3 {ECO:0000313|EMBL:CBL08269.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein n=3 Tax=Roseburia intestinalis RepID=D4KN17_9FIRM
L1_008_000M1_scaffold_280_19
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15455..16000)
DNA (546bp) protein (182aa)
DnaJ domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GD60_9FIRM
DnaJ domain protein {ECO:0000313|EMBL:EEV00247.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
DnaJ domain.
L1_008_000M1_scaffold_280_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16021..17319)
DNA (1299bp) protein (433aa)
HD domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GD61_9FIRM
HD domain protein {ECO:0000313|EMBL:EEV00248.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Response regulator containing a CheY-like receiver domain and an HD-GYP domain
L1_008_000M1_scaffold_280_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17421..18635)
DNA (1215bp) protein (405aa)
LL-diaminopimelate aminotransferase apoenzyme (EC:2.6.1.83)
LL-diaminopimelate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642}; Short=DAP-AT {ECO:0000256|HAMAP-Rule:MF_01642};; Short=DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; Short=LL-DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; EC=2.6.1.83 {ECO:0000256|HAMAP-Rule:MF_01642, ECO:0000313|EMBL:CBL08265.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
LL-diaminopimelate aminotransferase n=2 Tax=Roseburia intestinalis RepID=D4KN13_9FIRM
L1_008_000M1_scaffold_280_22
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18823..19563)
DNA (741bp) protein (247aa)
Acetyltransferase, GNAT family n=3 Tax=Roseburia RepID=C7GD63_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA57443.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000M1_scaffold_280_23
Firmicutes bacterium CAG:194, Firmicutes, Bacteria

Not on your lists

19802..20236
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0003670417
Uncharacterized protein {ECO:0000313|EMBL:CCZ27794.1}; TaxID=1263008 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:194.;"
hypothetical protein
L1_008_000M1_scaffold_280_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(20394..20747)
DNA (354bp) protein (118aa)
50S ribosomal protein L19 n=4 Tax=Roseburia RepID=D4KN11_9FIRM
ribosomal protein L19, bacterial type
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000M1_scaffold_280_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20877..21593)
DNA (717bp) protein (239aa)
tRNA (guanine-N1)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
tRNA (guanine-N(1)-)-methyltransferase n=2 Tax=Roseburia intestinalis RepID=D4KZK1_9FIRM
L1_008_000M1_scaffold_280_26
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21590..22123)
DNA (534bp) protein (178aa)
Ribosome maturation factor RimM n=2 Tax=Roseburia intestinalis RepID=D4KN09_9FIRM
16S rRNA processing protein RimM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L1_008_000M1_scaffold_280_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22179..22916)
DNA (738bp) protein (246aa)
Bacterial group 2 Ig-like protein n=2 Tax=Roseburia intestinalis RepID=C7GEV4_9FIRM
Bacterial group 2 Ig-like protein {ECO:0000313|EMBL:EEU99636.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Bacterial Ig-like domain (group 2).
L1_008_000M1_scaffold_280_28
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22997..23227)
DNA (231bp) protein (77aa)
UPF0109 protein ROI_10620 n=4 Tax=Roseburia RepID=D4KN07_9FIRM
RNA-binding protein (KH domain)
UPF0109 protein ROSINTL182_08457 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L1_008_000M1_scaffold_280_29
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(23246..23491)
DNA (246bp) protein (82aa)
30S ribosomal protein S16 n=4 Tax=Roseburia RepID=D4KN06_9FIRM
SSU ribosomal protein S16P
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000M1_scaffold_280_30
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(23527..24873)
DNA (1347bp) protein (449aa)
Signal recognition particle protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FMV0_9FIRM
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
signal recognition particle protein
Displaying items 1-30 of 69 in total

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