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L1_008_000M1_scaffold_338

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Displaying items 1-30 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_338_1
Coprococcus comes, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1..111
DNA (111bp) protein (37aa)
translation elongation factor 1A (EF-1A/EF-Tu) (EC:3.6.5.3)
Elongation factor Tu n=2 Tax=Clostridiales RepID=B0NBZ4_CLOSV
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=470146 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus comes ATCC 27758.;"
L1_008_000M1_scaffold_338_2
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

328..1242
DNA (915bp) protein (305aa)
Kinase, PfkB family n=2 Tax=Dorea RepID=A6BCN3_9FIRM
Kinase PfkB family {ECO:0000313|EMBL:CDE16787.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
putative kinase
L1_008_000M1_scaffold_338_3
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1282..2118
DNA (837bp) protein (279aa)
Transcriptional regulator AraC family n=1 Tax=Dorea longicatena CAG:42 RepID=R7FQB1_9FIRM
Transcriptional regulator AraC family {ECO:0000313|EMBL:CDE16786.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
AraC-type DNA-binding domain-containing proteins
L1_008_000M1_scaffold_338_4
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2245..2544
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Dorea longicatena CAG:42 RepID=R7FPM9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE16785.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
hypothetical protein
L1_008_000M1_scaffold_338_5
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2695..4170
DNA (1476bp) protein (492aa)
Uncharacterized protein n=1 Tax=Dorea longicatena CAG:42 RepID=R7FND1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE16784.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
L-fucose isomerase and related proteins
L1_008_000M1_scaffold_338_6
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4247..5710
DNA (1464bp) protein (488aa)
Xylulokinase {ECO:0000313|EMBL:EDM64205.1}; EC=2.7.1.17 {ECO:0000313|EMBL:EDM64205.1};; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
xylulokinase (EC:2.7.1.17)
Xylulokinase n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BCN8_9FIRM
L1_008_000M1_scaffold_338_7
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5930..7189
DNA (1260bp) protein (420aa)
Putative permease n=2 Tax=Dorea RepID=A6BCN9_9FIRM
Putative permease {ECO:0000313|EMBL:CDE16782.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
uracil-xanthine permease
L1_008_000M1_scaffold_338_8
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7167..8633)
DNA (1467bp) protein (489aa)
Glycosyl hydrolase, family 43 n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BCP0_9FIRM
Glycosyl hydrolase, family 43 {ECO:0000313|EMBL:EDM64207.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
putative beta-xylosidase
L1_008_000M1_scaffold_338_9
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8755..9843
DNA (1089bp) protein (363aa)
Transcriptional regulator LacI family n=1 Tax=Dorea longicatena CAG:42 RepID=R7FPM5_9FIRM
Transcriptional regulator LacI family {ECO:0000313|EMBL:CDE16780.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
transcriptional regulator, LacI family
L1_008_000M1_scaffold_338_10
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10151..12100
DNA (1950bp) protein (650aa)
Uncharacterized protein n=1 Tax=Dorea longicatena CAG:42 RepID=R7FNC7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE16779.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
hypothetical protein
L1_008_000M1_scaffold_338_11
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12167..13537
DNA (1371bp) protein (457aa)
Arabinose-binding protein n=1 Tax=Dorea longicatena CAG:42 RepID=R7FQK3_9FIRM
Arabinose-binding protein {ECO:0000313|EMBL:CDE16778.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)
L1_008_000M1_scaffold_338_12
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13634..14518
DNA (885bp) protein (295aa)
L-arabinose transport system permease protein AraP n=1 Tax=Dorea longicatena CAG:42 RepID=R7FSU5_9FIRM
L-arabinose transport system permease protein AraP {ECO:0000313|EMBL:CDE16777.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)
L1_008_000M1_scaffold_338_13
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14520..15368
DNA (849bp) protein (283aa)
ABC transporter, permease protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BCP5_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EDM64212.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
L1_008_000M1_scaffold_338_14
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15395..16909
DNA (1515bp) protein (505aa)
Alpha-L-arabinofuranosidase (EC:3.2.1.55)
Alpha-L-arabinofuranosidase domain protein n=2 Tax=Dorea RepID=A6BCP6_9FIRM
Alpha-L-arabinofuranosidase domain protein {ECO:0000313|EMBL:EDM64213.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
L1_008_000M1_scaffold_338_15
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16923..17552
DNA (630bp) protein (210aa)
Uncharacterized protein n=2 Tax=Dorea RepID=A6BCP7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE21766.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
Predicted integral membrane protein
L1_008_000M1_scaffold_338_16
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17774..18565)
DNA (792bp) protein (264aa)
Cof-like hydrolase n=1 Tax=Dorea longicatena CAG:42 RepID=R7G4X9_9FIRM
Cof-like hydrolase {ECO:0000313|EMBL:CDE21763.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
HAD-superfamily hydrolase, subfamily IIB
L1_008_000M1_scaffold_338_17
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18671..19123
DNA (453bp) protein (151aa)
ribose-5-phosphate isomerase (EC:5.3.1.6)
Ribose-5-phosphate isomerase B n=2 Tax=Dorea RepID=A6BCP9_9FIRM
Ribose-5-phosphate isomerase B {ECO:0000313|EMBL:CDE21762.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
L1_008_000M1_scaffold_338_18
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19308..19754)
DNA (447bp) protein (149aa)
RpiB/LacA/LacB family sugar-phosphate isomerase (EC:5.3.1.-)
Sugar-phosphate isomerase, RpiB/LacA/LacB family n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BCQ0_9FIRM
Sugar-phosphate isomerase, RpiB/LacA/LacB family {ECO:0000313|EMBL:EDM64217.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
L1_008_000M1_scaffold_338_19
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19856..20638)
DNA (783bp) protein (261aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
tpiA; Triosephosphate isomerase 2 (EC:5.3.1.1)
Triosephosphate isomerase n=1 Tax=Dorea longicatena CAG:42 RepID=R7G3P4_9FIRM
L1_008_000M1_scaffold_338_20
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20944..21963
DNA (1020bp) protein (340aa)
4-hydroxythreonine-4-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154}; EC=1.1.1.262 {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154};; 4-(phosphohydroxy)-L-threonine dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262)
4-hydroxythreonine-4-phosphate dehydrogenase n=2 Tax=Dorea RepID=A6BCQ2_9FIRM
L1_008_000M1_scaffold_338_21
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22006..23406
DNA (1401bp) protein (467aa)
YgbK domain protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BCQ3_9FIRM
YgbK domain protein {ECO:0000313|EMBL:EDM64220.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
hypothetical protein
L1_008_000M1_scaffold_338_22
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23470..24504
DNA (1035bp) protein (345aa)
Putative 2-keto-3-deoxygluconate transporter n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BCQ4_9FIRM
Putative 2-keto-3-deoxygluconate transporter {ECO:0000313|EMBL:EDM64221.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
2-keto-3-deoxygluconate permease
L1_008_000M1_scaffold_338_23
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24634..25185
DNA (552bp) protein (184aa)
Uncharacterized protein n=2 Tax=Dorea RepID=A6BCQ5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE20993.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
hypothetical protein
L1_008_000M1_scaffold_338_24
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25283..26050
DNA (768bp) protein (256aa)
Transcriptional regulator, DeoR family n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BCQ6_9FIRM
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:EDM64223.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
DeoR family transcriptional regulator
L1_008_000M1_scaffold_338_25
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26066..26758
DNA (693bp) protein (231aa)
Transcriptional regulator, GntR family n=2 Tax=Dorea RepID=A6BCQ7_9FIRM
Transcriptional regulator, GntR family {ECO:0000313|EMBL:EDM64224.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
transcriptional regulator, GntR family
L1_008_000M1_scaffold_338_26
Anaerostipes caccae, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27128..28684
DNA (1557bp) protein (519aa)
Transporter, lactate permease (LctP) family n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MCQ1_9FIRM
Transporter, lactate permease (LctP) family {ECO:0000313|EMBL:EDR97721.1}; TaxID=411490 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes caccae DSM 14662.;"
hypothetical protein
L1_008_000M1_scaffold_338_27
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28754..29542
DNA (789bp) protein (263aa)
Electron transfer flavoprotein domain-containing protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7A6Q0_9CLOT
Electron transfer flavoprotein domain-containing protein {ECO:0000313|EMBL:CDD56473.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
Electron transfer flavoprotein, beta subunit
L1_008_000M1_scaffold_338_28
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29555..30748
DNA (1194bp) protein (398aa)
Electron transfer flavoprotein domain-containing protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7ASF3_9CLOT
Electron transfer flavoprotein domain-containing protein {ECO:0000313|EMBL:CDD56476.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
Electron transfer flavoprotein, alpha subunit
L1_008_000M1_scaffold_338_29
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30751..32157
DNA (1407bp) protein (469aa)
FAD/FMN-containing dehydrogenases (EC:1.1.3.15)
FAD/FMN-containing dehydrogenases n=1 Tax=Clostridium sp. CAG:43 RepID=R7A6Q4_9CLOT
FAD/FMN-containing dehydrogenases {ECO:0000313|EMBL:CDD56478.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
L1_008_000M1_scaffold_338_30
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32270..33043
DNA (774bp) protein (258aa)
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
N-acetylmuramoyl-L-alanine amidase n=2 Tax=Dorea RepID=A6BCQ8_9FIRM
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:CDE16790.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
Displaying items 1-30 of 59 in total

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