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L1_008_000M1_scaffold_339

Search features with annotation key words

Displaying items 1-30 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_339_1
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

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1..651
DNA (651bp) protein (217aa)
S-layer domain protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MDR5_9FIRM
S-layer domain protein {ECO:0000313|EMBL:CDB94119.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
L1_008_000M1_scaffold_339_2
Clostridium sp. CAG:571, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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750..1334
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:571 RepID=R5YHS5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA16077.1}; TaxID=1262822 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:571.;"
L-2-amino-thiazoline-4-carboxylic acid hydrolase
L1_008_000M1_scaffold_339_3
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

1553..2212
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6M6K6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB94110.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
L1_008_000M1_scaffold_339_4
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

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2235..2972
DNA (738bp) protein (246aa)
RNA polymerase sigma factor n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6N870_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
RNA polymerase sigma 28 subunit
L1_008_000M1_scaffold_339_5
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

2990..3652
DNA (663bp) protein (221aa)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216328}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337};; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
orotate phosphoribosyltransferase (EC:2.4.2.10)
Orotate phosphoribosyltransferase n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6M6K4_9FIRM
L1_008_000M1_scaffold_339_6
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

3713..4711
DNA (999bp) protein (333aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MDQ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB94104.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
S-layer protein
L1_008_000M1_scaffold_339_7
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

4892..5959
DNA (1068bp) protein (356aa)
Branched-chain-amino-acid aminotransferase {ECO:0000256|RuleBase:RU004517}; EC=2.6.1.42 {ECO:0000256|RuleBase:RU004517};; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
ilvE; branched-chain amino acid aminotransferase (EC:2.6.1.42)
Branched-chain-amino-acid aminotransferase n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MIL1_9FIRM
L1_008_000M1_scaffold_339_8
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(6170..8356)
DNA (2187bp) protein (729aa)
PTS system glucose-like IIB component n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6M6K2_9FIRM
PTS system glucose-like IIB component {ECO:0000313|EMBL:CDB94100.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
PTS system glucose subfamily transporter subunit IIA
L1_008_000M1_scaffold_339_9
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(8416..9177)
DNA (762bp) protein (254aa)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
putative Baf family transcriptional acitvator (EC:2.7.1.33)
Type III pantothenate kinase n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6M395_9FIRM
L1_008_000M1_scaffold_339_10
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(9297..10568)
DNA (1272bp) protein (424aa)
ABC transporter solute-binding protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MIK9_9FIRM
ABC transporter solute-binding protein {ECO:0000313|EMBL:CDB94096.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
potD; spermidine/putrescine transport ATP-binding protein PotD
L1_008_000M1_scaffold_339_11
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(10565..11335)
DNA (771bp) protein (257aa)
ABC transporter permease protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6M6J8_9FIRM
ABC transporter permease protein {ECO:0000313|EMBL:CDB94095.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
potC; spermidine/putrescine transport transport ATP-binding protein PotC
L1_008_000M1_scaffold_339_12
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(11387..12196)
DNA (810bp) protein (270aa)
ABC transporter permease protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6M385_9FIRM
ABC transporter permease protein {ECO:0000313|EMBL:CDB94093.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
ABC-type spermidine/putrescine transport system, permease component I
L1_008_000M1_scaffold_339_13
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(12207..13250)
DNA (1044bp) protein (348aa)
Spermidine/putrescine import ATP-binding protein PotA {ECO:0000256|HAMAP-Rule:MF_01726}; EC=3.6.3.31 {ECO:0000256|HAMAP-Rule:MF_01726};; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
Polyamine ABC transporter ATP-binding protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MIK4_9FIRM
spermidine/putrescine ABC transporter ATP-binding subunit
L1_008_000M1_scaffold_339_14
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(13388..13819)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6N853_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB94087.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
hypothetical protein
L1_008_000M1_scaffold_339_15
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(14117..14812)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MIK0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB94086.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
conserved membrane protein of unknown function
L1_008_000M1_scaffold_339_16
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(14832..15599)
DNA (768bp) protein (256aa)
VTC domain n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6N849_9FIRM
VTC domain {ECO:0000313|EMBL:CDB94082.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
VTC domain-containing protein
L1_008_000M1_scaffold_339_17
unknown

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comp(15580..15753)
DNA (174bp) protein (58aa)

This feature has no annotations

L1_008_000M1_scaffold_339_18
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

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15807..16481
DNA (675bp) protein (225aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MDN1_9FIRM
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:CDB94079.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
L1_008_000M1_scaffold_339_19
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

16494..17822
DNA (1329bp) protein (443aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6M6I7_9FIRM
signal transduction histidine kinase
L1_008_000M1_scaffold_339_20
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(17907..19301)
DNA (1395bp) protein (465aa)
UDP-N-acetylmuramate--L-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344}; EC=6.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344};; UDP-N-acetylmuramoyl-L-alanine synthetase {ECO:0000256|HAMAP-Rule:MF_00046}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8)
UDP-N-acetylmuramate--L-alanine ligase n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6M369_9FIRM
L1_008_000M1_scaffold_339_21
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

19509..19790
DNA (282bp) protein (94aa)
Putative septation protein SpoVG n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MII5_9FIRM
Putative septation protein SpoVG {ECO:0000256|HAMAP-Rule:MF_00819}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
Uncharacterized protein, involved in the regulation of septum location
L1_008_000M1_scaffold_339_22
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

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comp(19830..20597)
DNA (768bp) protein (256aa)
Hydrolase TatD family n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6N836_9FIRM
Hydrolase TatD family {ECO:0000313|EMBL:CDB94067.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
TatD family hydrolase
L1_008_000M1_scaffold_339_23
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(20603..21160)
DNA (558bp) protein (186aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
5-formyltetrahydrofolate cyclo-ligase (EC:6.3.3.2)
5-formyltetrahydrofolate cyclo-ligase n=2 Tax=root RepID=R6MII1_9FIRM
L1_008_000M1_scaffold_339_24
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(21157..21690)
DNA (534bp) protein (178aa)
DJ-1 family protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6N833_9FIRM
DJ-1 family protein {ECO:0000313|EMBL:CDB94062.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
DJ-1 family protein
L1_008_000M1_scaffold_339_25
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

21863..23236
DNA (1374bp) protein (458aa)
Citrate synthase n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MDL6_9FIRM
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
hypothetical protein
L1_008_000M1_scaffold_339_26
Fusobacterium varium, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

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comp(23272..23676)
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Fusobacterium varium ATCC 27725 RepID=C6JNE0_FUSVA
Uncharacterized protein {ECO:0000313|EMBL:EES62362.1}; TaxID=469618 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium.;" source="Fusobacterium varium ATCC 27725.;"
hypothetical protein
L1_008_000M1_scaffold_339_27
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23676..24074)
DNA (399bp) protein (133aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PSM8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23769.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
TM2 domain-containing protein
L1_008_000M1_scaffold_339_28
DS1215_Thermoanaerobacter_34_5835, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(24211..25569)
DNA (1359bp) protein (453aa)
RNA methyltransferase, TrmA family n=1 Tax=Thermoanaerobacter ethanolicus CCSD1 RepID=C7IU26_THEET
TrmA family RNA methyltransferase
Tax=DS1215_Thermoanaerobacter_34_5835
L1_008_000M1_scaffold_339_29
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(25692..28658)
DNA (2967bp) protein (989aa)
S-layer domain-containing protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MHP6_9FIRM
S-layer domain-containing protein {ECO:0000313|EMBL:CDB93826.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
putative S-layer protein
L1_008_000M1_scaffold_339_30
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

29197..29802
DNA (606bp) protein (202aa)
Ribonuclease HI n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6M5S8_9FIRM
Ribonuclease HI {ECO:0000313|EMBL:CDB93825.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
ribonuclease HI
Displaying items 1-30 of 59 in total

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