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L1_008_000M1_scaffold_380

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_380_1
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..127
DNA (126bp) protein (42aa)
Fibronectin type III domain n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JW06_9FIRM
Fibronectin type III domain.
Fibronectin type III domain {ECO:0000313|EMBL:CBK97275.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_380_2
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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468..2846
DNA (2379bp) protein (793aa)
Membrane carboxypeptidase (penicillin-binding protein) (EC:2.4.1.- 3.4.-.-)
Transglycosylase n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MQW4_9FIRM
Transglycosylase {ECO:0000313|EMBL:EDR99881.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
L1_008_000M1_scaffold_380_3
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2909..4039
DNA (1131bp) protein (377aa)
Predicted N6-adenine-specific DNA methylase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JW04_9FIRM
Predicted N6-adenine-specific DNA methylase
Predicted N6-adenine-specific DNA methylase {ECO:0000313|EMBL:CBK97273.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_380_4
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4528..5709
DNA (1182bp) protein (394aa)
HDOD domain protein n=2 Tax=root RepID=B0MQW8_9FIRM
HDOD domain protein {ECO:0000313|EMBL:EDR99885.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
diguanylate phosphodiesterase
L1_008_000M1_scaffold_380_5
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5766..7124
DNA (1359bp) protein (453aa)
PAS domain S-box/diguanylate cyclase (GGDEF) domain n=2 Tax=root RepID=D4JW02_9FIRM
PAS domain S-box/diguanylate cyclase (GGDEF) domain
PAS domain S-box/diguanylate cyclase (GGDEF) domain {ECO:0000313|EMBL:CBK97271.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_380_6
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7310..7801
DNA (492bp) protein (164aa)
Ribosome maturation factor RimP n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6SBJ8_9FIRM
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
hypothetical protein
L1_008_000M1_scaffold_380_7
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7830..8942
DNA (1113bp) protein (371aa)
Transcription termination factor NusA n=2 Tax=root RepID=D4JW01_9FIRM
transcription termination factor NusA
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_380_8
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9251..9556
DNA (306bp) protein (102aa)
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family n=2 Tax=Eubacterium siraeum RepID=D4JW00_9FIRM
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family.
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family {ECO:0000313|EMBL:CBL33880.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L1_008_000M1_scaffold_380_9
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9616..12399
DNA (2784bp) protein (928aa)
Translation initiation factor IF-2 n=4 Tax=root RepID=B0MQX4_9FIRM
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
translation initiation factor IF-2
L1_008_000M1_scaffold_380_10
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12399..12779
DNA (381bp) protein (127aa)
Ribosome-binding factor A n=5 Tax=root RepID=D4MJE8_9FIRM
ribosome-binding factor A
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L1_008_000M1_scaffold_380_11
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12786..13748
DNA (963bp) protein (321aa)
Exopolyphosphatase-related proteins n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JVZ7_9FIRM
Exopolyphosphatase-related proteins
Exopolyphosphatase-related proteins {ECO:0000313|EMBL:CBK97266.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_380_12
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13741..14640
DNA (900bp) protein (300aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
tRNA pseudouridine 55 synthase (EC:5.4.99.12)
tRNA pseudouridine synthase B n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6R7X5_9FIRM
L1_008_000M1_scaffold_380_13
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14637..15566
DNA (930bp) protein (310aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Riboflavin biosynthesis protein RibF n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MQX8_9FIRM
riboflavin biosynthesis protein RibF
L1_008_000M1_scaffold_380_14
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15685..16668
DNA (984bp) protein (328aa)
ABC-type multidrug transport system, ATPase component n=2 Tax=Eubacterium siraeum RepID=D4JVZ5_9FIRM
ABC-type multidrug transport system, ATPase component
ABC-type multidrug transport system, ATPase component {ECO:0000313|EMBL:CBL33884.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L1_008_000M1_scaffold_380_15
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16688..17392
DNA (705bp) protein (235aa)
ABC-2 type transporter n=2 Tax=root RepID=D4JVZ4_9FIRM
ABC-2 type transporter.
ABC-2 type transporter {ECO:0000313|EMBL:CBK97263.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_380_16
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17429..19036
DNA (1608bp) protein (536aa)
ABC-type uncharacterized transport system n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MJF3_9FIRM
ABC-type uncharacterized transport system {ECO:0000313|EMBL:CBL33886.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
ABC-type uncharacterized transport system.
L1_008_000M1_scaffold_380_17
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19051..20529
DNA (1479bp) protein (493aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JVZ2_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK97261.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_380_18

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20637..20915
DNA (279bp) protein (93aa)
Uncharacterized protein n=2 Tax=root RepID=K1U7Z9_9ZZZZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKC76054.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_008_000M1_scaffold_380_19
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21264..21779)
DNA (516bp) protein (172aa)
Predicted membrane protein n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MJF6_9FIRM
Predicted membrane protein
Predicted membrane protein {ECO:0000313|EMBL:CBL33889.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L1_008_000M1_scaffold_380_20
unknown

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21997..22137
DNA (141bp) protein (47aa)

This feature has no annotations

L1_008_000M1_scaffold_380_21
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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22076..23260
DNA (1185bp) protein (395aa)
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JVY9_9FIRM
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs {ECO:0000313|EMBL:CBK97258.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_380_22
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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23577..25844
DNA (2268bp) protein (756aa)
ABC-type multidrug transport system, ATPase and permease components n=3 Tax=root RepID=D4JVY8_9FIRM
ABC-type multidrug transport system, ATPase and permease components {ECO:0000313|EMBL:CBK97257.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
ABC-type multidrug transport system, ATPase and permease components
L1_008_000M1_scaffold_380_23

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25844..26395
DNA (552bp) protein (184aa)
Uncharacterized protein n=2 Tax=human gut metagenome RepID=K1SBP7_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC54868.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Domain of unknown function (DUF1854).
L1_008_000M1_scaffold_380_24
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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26435..28627
DNA (2193bp) protein (731aa)
ABC-type multidrug transport system, ATPase and permease components n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MJG0_9FIRM
ABC-type multidrug transport system, ATPase and permease components {ECO:0000313|EMBL:CBL33893.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
ABC-type multidrug transport system, ATPase and permease components
L1_008_000M1_scaffold_380_25
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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28832..30151
DNA (1320bp) protein (440aa)
aspartate kinase (EC:2.7.2.4)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Aspartokinase n=6 Tax=root RepID=D4JVY5_9FIRM
L1_008_000M1_scaffold_380_26
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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30356..31570
DNA (1215bp) protein (405aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JVY4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK97253.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_380_27

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31818..32645
DNA (828bp) protein (276aa)
thymidylate synthase (EC:2.1.1.45)
Thymidylate synthase {ECO:0000313|EMBL:EKC47490.1}; EC=2.1.1.45 {ECO:0000313|EMBL:EKC47490.1};; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Thymidylate synthase n=3 Tax=root RepID=D4JVY3_9FIRM
L1_008_000M1_scaffold_380_28
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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32723..33736
DNA (1014bp) protein (338aa)
Exonuclease n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6S187_9FIRM
Exonuclease {ECO:0000313|EMBL:CDC49076.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Exonuclease RNase T and DNA polymerase III
L1_008_000M1_scaffold_380_29
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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33729..35255
DNA (1527bp) protein (509aa)
Domain of unknown function (DUF303). (EC:3.1.1.53)
Uncharacterized protein n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RJL5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC49078.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L1_008_000M1_scaffold_380_30
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35280..36788
DNA (1509bp) protein (503aa)
4-alpha-glucanotransferase (EC:2.4.1.25)
4-alpha-glucanotransferase {ECO:0000256|RuleBase:RU361207, ECO:0000313|EMBL:CBL33898.1}; EC=2.4.1.25 {ECO:0000256|RuleBase:RU361207, ECO:0000313|EMBL:CBL33898.1};; Amylomaltase {ECO:0000256|RuleBase:RU361207}; Disproportionating enzyme {ECO:0000256|RuleBase:RU361207}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
4-alpha-glucanotransferase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JVY1_9FIRM
Displaying items 1-30 of 57 in total

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