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L1_008_000M1_scaffold_419

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_419_1
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25..1113)
DNA (1089bp) protein (363aa)
translation elongation factor 1A (EF-1A/EF-Tu) (EC:3.6.5.3)
Elongation factor Tu n=1 Tax=Butyrivibrio fibrisolvens 16/4 RepID=D4J017_BUTFI
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
L1_008_000M1_scaffold_419_2
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1213..3375)
DNA (2163bp) protein (721aa)
Elongation factor G n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9IMY4_9FIRM
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
elongation factor G
L1_008_000M1_scaffold_419_3
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(3408..3878)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9INA3_9FIRM
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
30S ribosomal protein S7
L1_008_000M1_scaffold_419_4
Eubacterium sp. 14-2, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4056..4478)
DNA (423bp) protein (141aa)
30S ribosomal protein S12 n=2 Tax=Eubacterium sp. 14-2 RepID=S0J749_9FIRM
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1235790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 14-2.;"
SSU ribosomal protein S12P
L1_008_000M1_scaffold_419_5
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4727..6046)
DNA (1320bp) protein (440aa)
Cell surface protein n=1 Tax=Roseburia sp. CAG:45 RepID=R6NF06_9FIRM
Cell surface protein {ECO:0000313|EMBL:CDC09700.1}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
Chitin binding protein
L1_008_000M1_scaffold_419_6
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6071..7162)
DNA (1092bp) protein (364aa)
Sortase B family protein n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2SZ87_ROSHA
sortase B family protein
Sortase B family protein {ECO:0000313|EMBL:AEN95326.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L1_008_000M1_scaffold_419_7
Coprococcus sp. CAG:131, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7169..13690)
DNA (6522bp) protein (2174aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. CAG:131 RepID=R6KZL6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB80713.1}; TaxID=1262862 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus sp. CAG:131.;"
hypothetical protein
L1_008_000M1_scaffold_419_8
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13942..17784)
DNA (3843bp) protein (1281aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
DNA-directed RNA polymerase subunit beta' n=1 Tax=Roseburia sp. CAG:18 RepID=R5US22_9FIRM
DNA-directed RNA polymerase subunit beta'
L1_008_000M1_scaffold_419_9
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17804..21661)
DNA (3858bp) protein (1286aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HWQ9_9FIRM
L1_008_000M1_scaffold_419_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(22273..22650)
DNA (378bp) protein (126aa)
50S ribosomal protein L7/L12 n=4 Tax=Roseburia RepID=D4KM99_9FIRM
LSU ribosomal protein L12P
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000M1_scaffold_419_11
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(22706..23272)
DNA (567bp) protein (189aa)
50S ribosomal protein L10 n=1 Tax=Roseburia sp. CAG:45 RepID=R6PUY2_9FIRM
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
50S ribosomal protein L10
L1_008_000M1_scaffold_419_12
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(23488..24183)
DNA (696bp) protein (232aa)
50S ribosomal protein L1 n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9IMZ3_9FIRM
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
ribosomal protein L1, bacterial/chloroplast
L1_008_000M1_scaffold_419_13
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(24281..24706)
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9IMX3_9FIRM
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
LSU ribosomal protein L11P
L1_008_000M1_scaffold_419_14
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24725..25243)
DNA (519bp) protein (173aa)
Transcription termination/antitermination protein NusG n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2SZ77_ROSHA
transcription antitermination protein NusG
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L1_008_000M1_scaffold_419_15
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25263..25472)
DNA (210bp) protein (70aa)
Protein translocase subunit SecE n=1 Tax=Roseburia sp. CAG:45 RepID=R6NMY4_9FIRM
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
protein translocase subunit secE/sec61 gamma
L1_008_000M1_scaffold_419_16
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25950..27248
DNA (1299bp) protein (433aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:45 RepID=R6PUX8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC13552.1}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
hypothetical protein
L1_008_000M1_scaffold_419_17
Firmicutes bacterium CAG:882, Firmicutes, Bacteria

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comp(27368..27700)
DNA (333bp) protein (111aa)
Phosphoheptose isomerase n=1 Tax=Firmicutes bacterium CAG:882 RepID=R7BKY7_9FIRM
Phosphoheptose isomerase {ECO:0000313|EMBL:CDD66192.1}; TaxID=1262991 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:882.;"
phosphoheptose isomerase
L1_008_000M1_scaffold_419_18
Paenibacillus polymyxa, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(27798..28289)
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Paenibacillus polymyxa RepID=UPI0002FF0FF0
lipoprotein
Uncharacterized protein {ECO:0000313|EMBL:KJK31386.1}; TaxID=1406 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus polymyxa (Bacillus polymyxa).;"
L1_008_000M1_scaffold_419_19
Desulfitobacterium dichloroeliminans, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28401..30050)
DNA (1650bp) protein (550aa)
Putative membrane protein (DUF2207) n=1 Tax=Desulfitobacterium dichloroeliminans (strain LMG P-21439 / DCA1) RepID=L0F6Z6_DESDL
hypothetical protein
Putative membrane protein (DUF2207) {ECO:0000313|EMBL:AGA68426.1}; Flags: Precursor;; TaxID=871963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium dichloroeliminans (strain LMG P-21439 / DCA1).;"
L1_008_000M1_scaffold_419_20
Desulfitobacterium dichloroeliminans, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30061..30606)
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Desulfitobacterium dichloroeliminans (strain LMG P-21439 / DCA1) RepID=L0F5V2_DESDL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA68425.1}; TaxID=871963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium dichloroeliminans (strain LMG P-21439 / DCA1).;"
L1_008_000M1_scaffold_419_21
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30739..32007)
DNA (1269bp) protein (423aa)
Uncharacterized protein n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GI54_EUBLK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO35339.1}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
L1_008_000M1_scaffold_419_22
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32004..32708)
DNA (705bp) protein (235aa)
Response regulator receiver protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VCQ4_9FIRM
Response regulator receiver protein {ECO:0000313|EMBL:CDC94915.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
DNA-binding response regulator
L1_008_000M1_scaffold_419_23
Desulfovibrio alaskensis, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32830..34020)
DNA (1191bp) protein (397aa)
Uncharacterized protein n=1 Tax=Desulfovibrio desulfuricans (strain G20) RepID=Q30WA1_DESDG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB40045.1}; TaxID=207559 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio alaskensis (strain G20) (Desulfovibrio desulfuricans; (strain G20)).;"
L1_008_000M1_scaffold_419_24
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34125..34820)
DNA (696bp) protein (232aa)
CMP-sialic acid synthetase, putative n=1 Tax=Bacillus cereus G9241 RepID=Q4MV46_BACCE
Acylneuraminate cytidylyltransferase {ECO:0000313|EMBL:CEK31575.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
acylneuraminate cytidylyltransferase
L1_008_000M1_scaffold_419_25
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34822..35952)
DNA (1131bp) protein (377aa)
UDP-N-acetyl-D-glucosamine 2-epimerase (EC:5.1.3.14)
UDP-N-acetyl-D-glucosamine 2-epimerase UDP-hydrolysing n=1 Tax=Clostridium sp. CAG:62 RepID=R7C8J2_9CLOT
UDP-N-acetyl-D-glucosamine 2-epimerase UDP-hydrolysing {ECO:0000313|EMBL:CDD74494.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
L1_008_000M1_scaffold_419_26
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35949..36992)
DNA (1044bp) protein (348aa)
SAF domain protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7CAY2_9CLOT
SAF domain protein {ECO:0000313|EMBL:CDD74493.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
N-acetylneuraminic acid synthetase
L1_008_000M1_scaffold_419_27
Lachnospiraceae bacterium A2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37012..38874)
DNA (1863bp) protein (621aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium A2 RepID=R9KQH6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS48719.1}; TaxID=397290 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A2.;"
hypothetical protein
L1_008_000M1_scaffold_419_28
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38867..39199)
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9J515_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS26267.1}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
L1_008_000M1_scaffold_419_29
Lachnospiraceae bacterium A2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(39294..40487)
DNA (1194bp) protein (398aa)
Flagellin n=2 Tax=Lachnospiraceae bacterium A2 RepID=R9K6F9_9FIRM
Flagellin {ECO:0000313|EMBL:EOS42050.1}; TaxID=397290 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A2.;"
hypothetical protein
L1_008_000M1_scaffold_419_30
Lachnospiraceae bacterium 10-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(40775..41194)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 10-1 RepID=R9NF24_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS78597.1}; TaxID=1235800 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 10-1.;"
Displaying items 1-30 of 43 in total

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