ggKbase home page

L1_008_000M1_scaffold_422

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_422_1
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1..90
DNA (90bp) protein (30aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
Peptide deformylase n=1 Tax=Clostridium sp. CAG:43 RepID=R7ANH6_9CLOT
peptide deformylase
L1_008_000M1_scaffold_422_2
unknown

Not on your lists

127..1272
DNA (1146bp) protein (382aa)

This feature has no annotations

L1_008_000M1_scaffold_422_3
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1314..3758
DNA (2445bp) protein (815aa)
Extracellular solute-binding protein family 5 n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KKM1_CLOPH
extracellular solute-binding protein
Extracellular solute-binding protein family 5 {ECO:0000313|EMBL:ABX41192.1}; Flags: Precursor;; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L1_008_000M1_scaffold_422_4
GWF2_Clostridiales_36_10_curated, Clostridiales, Bacteria

Not on your lists

3907..4875
DNA (969bp) protein (323aa)
Binding-protein-dependent transport systems inner membrane component id=3445670 bin=GWF2_Clostridiales_36_10 species=Clostridium phytofermentans genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_36_10 organism_group=Firmicute
binding-protein-dependent transport system inner membrane protein
Tax=GWF2_Clostridiales_36_10_curated
L1_008_000M1_scaffold_422_5
GWF2_Clostridiales_36_10_curated, Clostridiales, Bacteria

Not on your lists

4890..5963
DNA (1074bp) protein (358aa)
Binding-protein-dependent transport systems inner membrane component id=3445669 bin=GWF2_Clostridiales_36_10 species=Clostridium phytofermentans genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_36_10 organism_group=Firmicute
binding-protein-dependent transport system inner membrane protein
Tax=GWF2_Clostridiales_36_10_curated
L1_008_000M1_scaffold_422_6
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5968..7149
DNA (1182bp) protein (394aa)
Oligopeptide/dipeptide ABC transporter, ATPase subunit n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KKM4_CLOPH
oligopeptide/dipeptide ABC transporter ATPase
Oligopeptide/dipeptide ABC transporter, ATPase subunit {ECO:0000313|EMBL:ABX41195.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L1_008_000M1_scaffold_422_7
GWF2_Clostridiales_36_10_curated, Clostridiales, Bacteria

Not on your lists

7142..8158
DNA (1017bp) protein (339aa)
Oligopeptide/dipeptide ABC transporter, ATPase subunit id=3445538 bin=GWF2_Clostridiales_36_10 species=Clostridium phytofermentans genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_36_10 organism_group=Firmicute
oligopeptide/dipeptide ABC transporter ATPase
Tax=GWF2_Clostridiales_36_10_curated
L1_008_000M1_scaffold_422_8
unknown

Not on your lists

8171..8440
DNA (270bp) protein (90aa)

This feature has no annotations

L1_008_000M1_scaffold_422_9
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

8467..11595
DNA (3129bp) protein (1043aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02003}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
isoleucyl-tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MLH0_9FIRM
L1_008_000M1_scaffold_422_10
Lachnospiraceae bacterium 28-4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11700..12266)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 28-4 RepID=R9JAI2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS31224.1}; TaxID=397287 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 28-4.;"
hypothetical protein
L1_008_000M1_scaffold_422_11
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12387..13508)
DNA (1122bp) protein (374aa)
Delta-lactam-biosynthetic de-N-acetylase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HWC1_9FIRM
Delta-lactam-biosynthetic de-N-acetylase {ECO:0000313|EMBL:CDB42193.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
polysaccharide deacetylase
L1_008_000M1_scaffold_422_12
Peptostreptococcaceae bacterium OBRC8, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13780..15069
DNA (1290bp) protein (430aa)
SPFH domain-band 7 family protein n=1 Tax=Eubacteriaceae bacterium OBRC8 RepID=J5ULA6_9FIRM
SPFH domain-band 7 family protein {ECO:0000313|EMBL:EJU23414.1}; TaxID=796941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae.;" source="Peptostreptococcaceae bacterium OBRC8.;"
hypothetical protein
L1_008_000M1_scaffold_422_13
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15087..16166
DNA (1080bp) protein (360aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CR52_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD17742.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L1_008_000M1_scaffold_422_14
Butyrivibrio crossotus, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16181..17008
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=D4RXE1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFF69303.1}; TaxID=511680 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio.;" source="Butyrivibrio crossotus DSM 2876.;"
Beta-propeller domains of methanol dehydrogenase type
L1_008_000M1_scaffold_422_15
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17541..17936
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M7I7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS63812.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
recombinase
L1_008_000M1_scaffold_422_16
unknown

Not on your lists

17891..18271
DNA (381bp) protein (127aa)

This feature has no annotations

L1_008_000M1_scaffold_422_17
unknown

Not on your lists

18856..19218
DNA (363bp) protein (121aa)

This feature has no annotations

L1_008_000M1_scaffold_422_18
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19203..19367
DNA (165bp) protein (55aa)
Resolvase domain n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UKQ4_RUMA7
Resolvase domain
Resolvase domain {ECO:0000313|EMBL:ADU24250.1}; TaxID=697329 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO; 2250 / 7).;"
L1_008_000M1_scaffold_422_19
unknown

Not on your lists

19961..20311
DNA (351bp) protein (117aa)

This feature has no annotations

L1_008_000M1_scaffold_422_20
Petrotoga mobilis, Petrotoga, Petrotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

20298..21956
DNA (1659bp) protein (553aa)
Radical SAM domain protein n=1 Tax=Petrotoga mobilis (strain DSM 10674 / SJ95) RepID=A9BGM8_PETMO
radical SAM domain-containing protein
Radical SAM domain protein {ECO:0000313|EMBL:ABX32268.1}; TaxID=403833 species="Bacteria; Thermotogae; Petrotogales; Petrotogaceae; Petrotoga.;" source="Petrotoga mobilis (strain DSM 10674 / SJ95).;"
L1_008_000M1_scaffold_422_21
Petrotoga mobilis, Petrotoga, Petrotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

21956..23020
DNA (1065bp) protein (355aa)
Radical SAM domain protein n=1 Tax=Petrotoga mobilis (strain DSM 10674 / SJ95) RepID=A9BGM8_PETMO
radical SAM domain-containing protein
Radical SAM domain protein {ECO:0000313|EMBL:ABX32268.1}; TaxID=403833 species="Bacteria; Thermotogae; Petrotogales; Petrotogaceae; Petrotoga.;" source="Petrotoga mobilis (strain DSM 10674 / SJ95).;"
L1_008_000M1_scaffold_422_22
unknown

Not on your lists

23084..23206
DNA (123bp) protein (41aa)

This feature has no annotations

L1_008_000M1_scaffold_422_23
CG_Solirubrobact_01, Rubrobacteridae, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23281..24255
DNA (975bp) protein (325aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:265 RepID=R6KYR7_9CLOT
hypothetical protein
Tax=CG_Solirubrobact_01
L1_008_000M1_scaffold_422_24
unknown

Not on your lists

24248..25069
DNA (822bp) protein (274aa)

This feature has no annotations

L1_008_000M1_scaffold_422_25
Paenibacillus sp. FSL R7-269, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

25062..26858
DNA (1797bp) protein (599aa)
ABC transporter family protein n=1 Tax=Firmicutes bacterium CAG:24 RepID=R5GWG6_9FIRM
ABC transporter ATP-binding protein {ECO:0000313|EMBL:ETT52982.1}; TaxID=1226755 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL R7-269.;"
subtilin transport ATP-binding protein SpaT
L1_008_000M1_scaffold_422_26
Paenibacillus sp. FSL R7-269, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

26848..28626
DNA (1779bp) protein (593aa)
ABC transporter n=1 Tax=Treponema pedis str. T A4 RepID=S6A1X8_9SPIO
ABC transporter-like protein {ECO:0000313|EMBL:ETT52981.1}; TaxID=1226755 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL R7-269.;"
ABC transporter
L1_008_000M1_scaffold_422_27
Eubacterium sp. CAG:841, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28639..29532
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:841 RepID=R7FTR8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE17913.1}; TaxID=1262894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:841.;"
L1_008_000M1_scaffold_422_28
RBG_13_Planctomycetes_63_9_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

29492..29914
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 28-4 RepID=R9J9C5_9FIRM
Tax=RBG_13_Planctomycetes_63_9_curated
L1_008_000M1_scaffold_422_29
Eubacterium sp. CAG:841, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29927..30196
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:841 RepID=R7FW25_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE17912.1}; TaxID=1262894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:841.;"
acyl carrier protein
L1_008_000M1_scaffold_422_30
Eubacterium sp. CAG:841, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30198..31742
DNA (1545bp) protein (515aa)
FkbH like protein n=1 Tax=Eubacterium sp. CAG:841 RepID=R7FTE2_9FIRM
FkbH like protein {ECO:0000313|EMBL:CDE17911.1}; TaxID=1262894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:841.;"
FkbH domain-containing protein
Displaying items 1-30 of 50 in total

View Taxonomy