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L1_008_000M1_scaffold_438

Search features with annotation key words

Displaying items 1-30 of 69 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_438_1
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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851..1678
-----------------
DNA (828bp)
protein (276aa)
AraC-type DNA-binding domain-containing proteins n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JSD5_9FIRM
AraC-type DNA-binding domain-containing proteins
AraC-type DNA-binding domain-containing proteins {ECO:0000313|EMBL:CBK96004.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_438_2
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1836..3209
-----------------
DNA (1374bp)
protein (458aa)
Beta-mannanase (EC:3.2.1.78)
Beta-mannanase {ECO:0000313|EMBL:CBK96003.1}; EC=3.2.1.78 {ECO:0000313|EMBL:CBK96003.1};; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Beta-mannanase n=2 Tax=root RepID=D4JSD4_9FIRM
L1_008_000M1_scaffold_438_3
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3226..4083
-----------------
DNA (858bp)
protein (286aa)
Galactose mutarotase and related enzymes n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JSD3_9FIRM
Galactose mutarotase and related enzymes
Galactose mutarotase and related enzymes {ECO:0000313|EMBL:CBK96002.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_438_4
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4327..5178)
-----------------
DNA (852bp)
protein (284aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JSD2_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK96001.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_438_5
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5645..6211
-----------------
DNA (567bp)
protein (189aa)
Elongation factor P n=4 Tax=Eubacterium RepID=D4JSD1_9FIRM
translation elongation factor P (EF-P)
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
L1_008_000M1_scaffold_438_6
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6265..6714
-----------------
DNA (450bp)
protein (150aa)
Uncharacterized protein n=3 Tax=Eubacterium RepID=R6RH82_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDC48228.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L1_008_000M1_scaffold_438_7
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7073..7897
-----------------
DNA (825bp)
protein (275aa)
Nucleotide-binding protein n=3 Tax=root RepID=B0MK04_9FIRM
Nucleotide-binding protein {ECO:0000313|EMBL:CDC47955.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
ATPases involved in chromosome partitioning
L1_008_000M1_scaffold_438_8
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7994..8992
-----------------
DNA (999bp)
protein (333aa)
birA, biotin-[acetyl-CoA-carboxylase] ligase region (EC:6.3.4.15)
BirA, biotin-[acetyl-CoA-carboxylase] ligase region n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MKV8_9FIRM
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L1_008_000M1_scaffold_438_9
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8995..10257
-----------------
DNA (1263bp)
protein (421aa)
Chloride channel protein EriC n=2 Tax=root RepID=D4JSC8_9FIRM
Chloride channel protein EriC
Chloride channel protein EriC {ECO:0000313|EMBL:CBK95997.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_438_10
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10431..13058
-----------------
DNA (2628bp)
protein (876aa)
Methyl-accepting chemotaxis protein n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MKV6_9FIRM
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:CBL34389.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
Methyl-accepting chemotaxis protein
L1_008_000M1_scaffold_438_11
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13821..14291
-----------------
DNA (471bp)
protein (157aa)
Oxaloacetate decarboxylase gamma chain {ECO:0000256|RuleBase:RU004278}; EC=4.1.1.3 {ECO:0000256|RuleBase:RU004278};; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Oxaloacetate decarboxylase gamma chain n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JSC6_9FIRM
sodium pump decarboxylases, gamma subunit
L1_008_000M1_scaffold_438_12
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14320..15558
-----------------
DNA (1239bp)
protein (413aa)
glutaconyl-CoA decarboxylase beta subunit (EC:4.1.1.70 4.1.1.3)
Glutaconyl-CoA decarboxylase beta subunit {ECO:0000313|EMBL:CBL34387.1}; EC=4.1.1.3 {ECO:0000313|EMBL:CBL34387.1};; EC=4.1.1.70 {ECO:0000313|EMBL:CBL34387.1};; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
Glutaconyl-CoA decarboxylase beta subunit n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MKV4_9FIRM
L1_008_000M1_scaffold_438_13
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15814..16071)
-----------------
DNA (258bp)
protein (86aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6SRC4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC49167.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
hypothetical protein
L1_008_000M1_scaffold_438_14
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16381..17217
-----------------
DNA (837bp)
protein (279aa)
Ankyrin repeat protein n=2 Tax=Eubacterium RepID=B0MM29_9FIRM
Ankyrin repeat protein {ECO:0000313|EMBL:CDC49166.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
arp; ankyrin repeat-containing protein
L1_008_000M1_scaffold_438_15
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17257..18558
-----------------
DNA (1302bp)
protein (434aa)
Transposase, IS605 OrfB family n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MM30_9FIRM
Transposase, IS605 OrfB family {ECO:0000313|EMBL:EDS01208.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
transposase, IS605 OrfB family
L1_008_000M1_scaffold_438_16
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19065..19346
-----------------
DNA (282bp)
protein (94aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MM31_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS01209.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
L1_008_000M1_scaffold_438_17
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19442..20461)
-----------------
DNA (1020bp)
protein (340aa)
Uncharacterized protein n=2 Tax=Eubacterium RepID=R6RUZ8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDC49164.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L1_008_000M1_scaffold_438_18
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20478..22016)
-----------------
DNA (1539bp)
protein (513aa)
Membrane protein involved in the export of O-antigen and teichoic acid n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MKV1_9FIRM
Membrane protein involved in the export of O-antigen and teichoic acid
Membrane protein involved in the export of O-antigen and teichoic acid {ECO:0000313|EMBL:CBL34384.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L1_008_000M1_scaffold_438_19
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22487..24637
-----------------
DNA (2151bp)
protein (717aa)
PAS domain S-box/diguanylate cyclase (GGDEF) domain n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MKV0_9FIRM
PAS domain S-box/diguanylate cyclase (GGDEF) domain
PAS domain S-box/diguanylate cyclase (GGDEF) domain {ECO:0000313|EMBL:CBL34383.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L1_008_000M1_scaffold_438_20
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24714..25151
-----------------
DNA (438bp)
protein (146aa)
Acetyltransferases n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MKU9_9FIRM
Acetyltransferases
Acetyltransferases {ECO:0000313|EMBL:CBL34382.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L1_008_000M1_scaffold_438_21
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25630..28041
-----------------
DNA (2412bp)
protein (804aa)
hypothetical protein n=1 Tax=Eubacterium siraeum RepID=UPI000315239A
Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:EDS01217.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
diguanylate cyclase (GGDEF) domain
L1_008_000M1_scaffold_438_22
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28038..28382
-----------------
DNA (345bp)
protein (115aa)
Hpt domain protein n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RUZ5_9FIRM
Hpt domain protein {ECO:0000313|EMBL:CDC49159.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
FOG: HPt domain
L1_008_000M1_scaffold_438_23
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28530..29537
-----------------
DNA (1008bp)
protein (336aa)
Quinolinate synthase {ECO:0000256|SAAS:SAAS00096027}; EC=2.5.1.72 {ECO:0000256|SAAS:SAAS00096027};; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Quinolinate synthetase complex, A subunit n=2 Tax=Eubacterium RepID=B0MM41_9FIRM
quinolinate synthetase A
L1_008_000M1_scaffold_438_24
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29965..30846
-----------------
DNA (882bp)
protein (294aa)
ppiB; Putative peptidyl-prolyl cis-trans isomerase Short=PPIase; Short=Rotamase (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase cyclophilin-type n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6SRB6_9FIRM
Peptidyl-prolyl cis-trans isomerase cyclophilin-type {ECO:0000313|EMBL:CDC49157.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L1_008_000M1_scaffold_438_25
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30873..31808
-----------------
DNA (936bp)
protein (312aa)
Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase (Rotamase)-cyclophilin family n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RN84_9FIRM
Peptidyl-prolyl cis-trans isomerase (Rotamase)-cyclophilin family {ECO:0000313|EMBL:CDC49155.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L1_008_000M1_scaffold_438_26
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32006..35269)
-----------------
DNA (3264bp)
protein (1088aa)
PASTA domain protein n=2 Tax=Eubacterium RepID=B0MM44_9FIRM
PASTA domain protein {ECO:0000313|EMBL:EDS01222.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
serine/threonine protein kinase
L1_008_000M1_scaffold_438_27
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35271..37244)
-----------------
DNA (1974bp)
protein (658aa)
Kinase domain protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MM45_9FIRM
Kinase domain protein {ECO:0000313|EMBL:EDS01223.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
hypothetical protein
L1_008_000M1_scaffold_438_28
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37257..38141)
-----------------
DNA (885bp)
protein (295aa)
FHA domain protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MM46_9FIRM
FHA domain protein {ECO:0000313|EMBL:EDS01224.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
signal peptide protein
L1_008_000M1_scaffold_438_29
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38154..38951)
-----------------
DNA (798bp)
protein (266aa)
Protein phosphatase 2C n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MM70_9FIRM
Protein phosphatase 2C {ECO:0000313|EMBL:EDS01225.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Serine/threonine protein phosphatase
L1_008_000M1_scaffold_438_30
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38969..39697)
-----------------
DNA (729bp)
protein (243aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MM71_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS01226.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
hypothetical protein
Displaying items 1-30 of 69 in total

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