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L1_008_000M1_scaffold_442

Search features with annotation key words

Displaying items 1-30 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_442_1
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..1648)
DNA (1647bp) protein (549aa)
helicase, putative, RecD/TraA family (EC:3.1.11.5)
ATP-dependent RecD-like DNA helicase {ECO:0000256|HAMAP-Rule:MF_01488}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01488};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Helicase, putative, RecD/TraA family n=2 Tax=Roseburia intestinalis RepID=D4KLH2_9FIRM
L1_008_000M1_scaffold_442_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1877..2233)
DNA (357bp) protein (119aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KLH1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL07723.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000M1_scaffold_442_3
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2268..3086)
DNA (819bp) protein (273aa)
Fagellar hook-basal body proteins n=3 Tax=Roseburia RepID=D4KLH0_9FIRM
fagellar hook-basal body proteins
Fagellar hook-basal body proteins {ECO:0000313|EMBL:CDA54634.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000M1_scaffold_442_4
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3107..3901)
DNA (795bp) protein (265aa)
Fagellar hook-basal body proteins n=4 Tax=Roseburia RepID=D4KLG9_9FIRM
fagellar hook-basal body proteins
Fagellar hook-basal body proteins {ECO:0000313|EMBL:CBL13737.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000M1_scaffold_442_5
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4044..5096)
DNA (1053bp) protein (351aa)
Rod shape-determining protein MreB n=4 Tax=Roseburia RepID=D4KLG8_9FIRM
Cell shape determining protein, MreB/Mrl family {ECO:0000313|EMBL:EEV01568.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
rod shape-determining protein MreB
L1_008_000M1_scaffold_442_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5456..6496)
DNA (1041bp) protein (347aa)
Acyltransferase family n=2 Tax=Roseburia intestinalis RepID=D4L295_9FIRM
Acyltransferase family.
Acyltransferase family {ECO:0000313|EMBL:CBL13735.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000M1_scaffold_442_7
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6493..7536)
DNA (1044bp) protein (348aa)
Fucose 4-O-acetylase and related acetyltransferases n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KLG6_9FIRM
Fucose 4-O-acetylase and related acetyltransferases
Fucose 4-O-acetylase and related acetyltransferases {ECO:0000313|EMBL:CBL07718.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000M1_scaffold_442_8
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7575..8351)
DNA (777bp) protein (259aa)
Methyltransferase, FkbM family n=2 Tax=Roseburia intestinalis RepID=D4KLG5_9FIRM
methyltransferase, FkbM family
Methyltransferase, FkbM family {ECO:0000313|EMBL:CBL07717.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000M1_scaffold_442_9
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8494..8778
DNA (285bp) protein (95aa)
DNA-binding helix-turn-helix protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G9M2_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EEV01572.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Predicted transcriptional regulators
L1_008_000M1_scaffold_442_10
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8869..11592)
DNA (2724bp) protein (908aa)
UvrABC system protein A n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B6L8_9FIRM
excinuclease ABC, A subunit
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000M1_scaffold_442_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11672..13654)
DNA (1983bp) protein (661aa)
UvrABC system protein B n=3 Tax=Roseburia intestinalis RepID=D4L292_9FIRM
excinuclease ABC, B subunit
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000M1_scaffold_442_12
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13884..15086)
DNA (1203bp) protein (401aa)
Uncharacterized flavoproteins n=2 Tax=Roseburia intestinalis RepID=D4KLG3_9FIRM
Uncharacterized flavoproteins
Uncharacterized flavoproteins {ECO:0000313|EMBL:CBL13731.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000M1_scaffold_442_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15378..17948)
DNA (2571bp) protein (857aa)
Protein translocase subunit SecA n=4 Tax=Roseburia RepID=D4KLG2_9FIRM
protein translocase subunit secA
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000M1_scaffold_442_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18209..18469
DNA (261bp) protein (87aa)
Uncharacterized protein n=3 Tax=Roseburia intestinalis RepID=C7G9N1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL13729.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000M1_scaffold_442_15
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18567..19151)
DNA (585bp) protein (195aa)
Dipicolinic acid synthetase, B subunit n=3 Tax=Roseburia intestinalis RepID=D4KLG0_9FIRM
dipicolinic acid synthetase, B subunit
Dipicolinic acid synthetase, B subunit {ECO:0000313|EMBL:CBL13728.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000M1_scaffold_442_16
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19141..20001)
DNA (861bp) protein (287aa)
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KLF9_9FIRM
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain.
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain {ECO:0000313|EMBL:CBL07711.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000M1_scaffold_442_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20822..22141)
DNA (1320bp) protein (440aa)
aspartate kinase (EC:2.7.2.4)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448, ECO:0000313|EMBL:CBL07709.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Aspartokinase n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KLF7_9FIRM
L1_008_000M1_scaffold_442_18
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22335..23159)
DNA (825bp) protein (275aa)
Uncharacterized protein n=3 Tax=Roseburia intestinalis RepID=C7G9N7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL13725.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000M1_scaffold_442_19
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23149..24054)
DNA (906bp) protein (302aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KLF5_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL07707.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000M1_scaffold_442_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24142..25749)
DNA (1608bp) protein (536aa)
Mannitol-1-phosphate/altronate dehydrogenases (EC:1.1.1.57)
Mannitol-1-phosphate/altronate dehydrogenases {ECO:0000313|EMBL:CBL07706.1}; EC=1.1.1.57 {ECO:0000313|EMBL:CBL07706.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Mannitol-1-phosphate/altronate dehydrogenases n=2 Tax=Roseburia RepID=D4KLF4_9FIRM
L1_008_000M1_scaffold_442_21
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25929..26804
DNA (876bp) protein (292aa)
AraC-type DNA-binding domain-containing proteins n=2 Tax=Roseburia RepID=D4KLF3_9FIRM
AraC-type DNA-binding domain-containing proteins
AraC-type DNA-binding domain-containing proteins {ECO:0000313|EMBL:CDA54659.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000M1_scaffold_442_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26808..27644)
DNA (837bp) protein (279aa)
Uncharacterized protein, putative amidase n=3 Tax=Roseburia RepID=D4KLF2_9FIRM
Uncharacterized protein, putative amidase
Uncharacterized protein, putative amidase {ECO:0000313|EMBL:CBL07704.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000M1_scaffold_442_23
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27701..28570)
DNA (870bp) protein (290aa)
Amidohydrolase family protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BMU4_9FIRM
Amidohydrolase family protein {ECO:0000313|EMBL:CDA54662.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hydrolase
L1_008_000M1_scaffold_442_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28587..30044)
DNA (1458bp) protein (486aa)
Sugar (Glycoside-Pentoside-Hexuronide) transporter n=4 Tax=Roseburia RepID=D4L280_9FIRM
sugar (Glycoside-Pentoside-Hexuronide) transporter
Sugar (Glycoside-Pentoside-Hexuronide) transporter {ECO:0000313|EMBL:CBL13720.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000M1_scaffold_442_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30161..31132
DNA (972bp) protein (324aa)
AraC-type DNA-binding domain-containing proteins n=3 Tax=Roseburia RepID=D4KLF0_9FIRM
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EEV01456.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
AraC-type DNA-binding domain-containing proteins
L1_008_000M1_scaffold_442_26
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31297..32382)
DNA (1086bp) protein (362aa)
D-mannonate dehydratase (EC:4.2.1.8)
Mannonate dehydratase {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414}; EC=4.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414};; D-mannonate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00106}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Mannonate dehydratase n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KLE9_9FIRM
L1_008_000M1_scaffold_442_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32660..33526)
DNA (867bp) protein (289aa)
LysM domain n=3 Tax=Roseburia intestinalis RepID=D4KLE8_9FIRM
LysM domain.
LysM domain {ECO:0000313|EMBL:CBL07700.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000M1_scaffold_442_28
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33703..34395)
DNA (693bp) protein (231aa)
Putative effector of murein hydrolase n=3 Tax=Roseburia RepID=D4KLE7_9FIRM
Putative effector of murein hydrolase
Putative effector of murein hydrolase {ECO:0000313|EMBL:CDA54667.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000M1_scaffold_442_29
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34392..34757)
DNA (366bp) protein (122aa)
LrgA family protein n=3 Tax=Roseburia RepID=C7G9Q1_9FIRM
LrgA family protein {ECO:0000313|EMBL:CDA54669.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Putative effector of murein hydrolase LrgA
L1_008_000M1_scaffold_442_30
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34874..35587)
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G9Q2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV01463.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Uncharacterised protein family (UPF0153).
Displaying items 1-30 of 58 in total

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