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L1_008_000M1_scaffold_444

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_444_1
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..184)
DNA (183bp) protein (61aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JW54_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK97323.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_444_2
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1054..3459
DNA (2406bp) protein (802aa)
leucyl-tRNA synthetase, eubacterial and mitochondrial family (EC:6.1.1.4)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Leucine--tRNA ligase n=2 Tax=Eubacterium RepID=D4MJ90_9FIRM
L1_008_000M1_scaffold_444_3
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3861..4586
DNA (726bp) protein (242aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MJ88_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL33821.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L1_008_000M1_scaffold_444_4
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4652..5320)
DNA (669bp) protein (223aa)
Response regulator receiver domain protein n=2 Tax=root RepID=B0MQP5_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:EDS00021.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
hypothetical protein
L1_008_000M1_scaffold_444_5
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5317..7257)
DNA (1941bp) protein (647aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Signal transduction histidine kinase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JW57_9FIRM
Signal transduction histidine kinase
L1_008_000M1_scaffold_444_6
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7489..7734)
DNA (246bp) protein (82aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JTM0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK96439.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_444_7
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7773..9173
DNA (1401bp) protein (467aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:CBK97327.1}; EC=3.4.16.4 {ECO:0000313|EMBL:CBK97327.1};; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
D-alanyl-D-alanine carboxypeptidase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JW58_9FIRM
L1_008_000M1_scaffold_444_8
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9173..9655
DNA (483bp) protein (161aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Ribosomal RNA large subunit methyltransferase H n=4 Tax=root RepID=D4MJ85_9FIRM
hypothetical protein
L1_008_000M1_scaffold_444_9
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9701..10171
DNA (471bp) protein (157aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JW60_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK97329.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_444_10
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10465..11745)
DNA (1281bp) protein (427aa)
O-acetylhomoserine (thiol)-lyase (EC:2.5.1.49)
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MQL9_9FIRM
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase {ECO:0000313|EMBL:EDR99994.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
L1_008_000M1_scaffold_444_11
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11854..12384)
DNA (531bp) protein (177aa)
Uncharacterized protein n=2 Tax=Eubacterium siraeum RepID=B0MQL8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL33816.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L1_008_000M1_scaffold_444_12
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12728..13825
DNA (1098bp) protein (366aa)
glutamate synthase (NADPH) GltB1 subunit (EC:1.4.1.13)
Glutamate synthase (NADPH) GltB1 subunit n=2 Tax=root RepID=R6R626_9FIRM
Glutamate synthase (NADPH) GltB1 subunit {ECO:0000313|EMBL:CDC44408.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L1_008_000M1_scaffold_444_13
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13843..15348
DNA (1506bp) protein (502aa)
4Fe-4S binding domain protein n=4 Tax=root RepID=B0MQL5_9FIRM
4Fe-4S binding domain protein {ECO:0000313|EMBL:CDC44410.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
glutamate synthase family protein
L1_008_000M1_scaffold_444_14
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15364..15798
DNA (435bp) protein (145aa)
Fe-S-cluster-containing hydrogenase components 2 n=2 Tax=Eubacterium RepID=D4JW87_9FIRM
Fe-S-cluster-containing hydrogenase components 2
Fe-S-cluster-containing hydrogenase components 2 {ECO:0000313|EMBL:CDC44413.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L1_008_000M1_scaffold_444_15
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15810..17045
DNA (1236bp) protein (412aa)
NAD(P)H-nitrite reductase n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MJ79_9FIRM
NAD(P)H-nitrite reductase
NAD(P)H-nitrite reductase {ECO:0000313|EMBL:CBL33812.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L1_008_000M1_scaffold_444_16
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17083..17808
DNA (726bp) protein (242aa)
glutamate synthase (NADPH) GltB3 subunit (EC:1.4.1.13)
Glutamate synthase (NADPH) GltB3 subunit {ECO:0000313|EMBL:CBL33811.1}; EC=1.4.1.13 {ECO:0000313|EMBL:CBL33811.1};; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
Glutamate synthase (NADPH) GltB3 subunit n=3 Tax=root RepID=D4JW89_9FIRM
L1_008_000M1_scaffold_444_17
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17901..18479
DNA (579bp) protein (193aa)
ANTAR domain protein n=3 Tax=Eubacterium RepID=B0MQL1_9FIRM
Response regulator with putative antiterminator output domain
Response regulator with putative antiterminator output domain {ECO:0000313|EMBL:CDC44418.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L1_008_000M1_scaffold_444_18
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18907..20121
DNA (1215bp) protein (405aa)
Alcohol dehydrogenase, iron-dependent {ECO:0000313|EMBL:EDR99983.1}; EC=1.1.1.1 {ECO:0000313|EMBL:EDR99983.1};; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Alcohol dehydrogenase, iron-dependent n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MQK8_9FIRM
Alcohol dehydrogenase, class IV
L1_008_000M1_scaffold_444_19
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20806..20973
DNA (168bp) protein (56aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MJ74_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL33807.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L1_008_000M1_scaffold_444_20
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20966..22318
DNA (1353bp) protein (451aa)
Uncharacterised protein family (UPF0153) n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MJ73_9FIRM
Uncharacterised protein family (UPF0153).
Uncharacterised protein family (UPF0153) {ECO:0000313|EMBL:CBL33806.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L1_008_000M1_scaffold_444_21

Not on your lists

22663..24264
DNA (1602bp) protein (534aa)
Flagellin n=1 Tax=human gut metagenome RepID=K1TYX4_9ZZZZ
Flagellin {ECO:0000313|EMBL:EKC72799.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Flagellin and related hook-associated proteins
L1_008_000M1_scaffold_444_22
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24330..24794
DNA (465bp) protein (155aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JW95_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK97364.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_444_23
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25050..25730)
DNA (681bp) protein (227aa)
Membrane proteins related to metalloendopeptidases n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JW96_9FIRM
Membrane proteins related to metalloendopeptidases
Membrane proteins related to metalloendopeptidases {ECO:0000313|EMBL:CBK97365.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_444_24
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26242..27300
DNA (1059bp) protein (353aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR001361}; DAHP synthase {ECO:0000256|PIRNR:PIRNR001361}; Phospho-2-keto-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase n=3 Tax=root RepID=B0MQJ7_9FIRM
L1_008_000M1_scaffold_444_25
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27677..28612)
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MQJ6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDR99971.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
hypothetical protein
L1_008_000M1_scaffold_444_26
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28633..30726)
DNA (2094bp) protein (698aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JW99_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK97368.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_444_27
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(30943..33591)
DNA (2649bp) protein (883aa)
valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Valine--tRNA ligase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JWA0_9FIRM
L1_008_000M1_scaffold_444_28
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33628..35391)
DNA (1764bp) protein (588aa)
Fibronectin-binding protein A domain protein n=4 Tax=root RepID=B0MQJ4_9FIRM
Fibronectin-binding protein A domain protein {ECO:0000313|EMBL:EDR99969.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Predicted RNA-binding protein homologous to eukaryotic snRNP
L1_008_000M1_scaffold_444_29
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35414..36187)
DNA (774bp) protein (258aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Putative GTP cyclohydrolase 1 type 2 n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JWA3_9FIRM
conserved hypothetical protein TIGR00486
L1_008_000M1_scaffold_444_30
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36206..36865)
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6R632_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC44423.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Predicted SAM-dependent methyltransferase
Displaying items 1-30 of 57 in total

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