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L1_008_000M1_scaffold_466

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Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_466_1
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..1689)
DNA (1689bp) protein (563aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_46FAA RepID=F3AYD9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG81467.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
peptidoglycan glycosyltransferase
L1_008_000M1_scaffold_466_2
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2166..2849)
DNA (684bp) protein (228aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5IQ72_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY44275.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L1_008_000M1_scaffold_466_3
Enterococcus cecorum, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3144..3620)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Enterococcus cecorum DSM 20682 = ATCC 43198 RepID=S1RJ88_9ENTE
Uncharacterized protein {ECO:0000313|EMBL:ESK62690.1}; TaxID=1121864 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus cecorum DSM 20682 = ATCC 43198.;"
hypothetical protein
L1_008_000M1_scaffold_466_4
Enterococcus cecorum, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(3613..5433)
DNA (1821bp) protein (607aa)
Uncharacterized protein n=1 Tax=Enterococcus cecorum DSM 20682 = ATCC 43198 RepID=S1R582_9ENTE
Uncharacterized protein {ECO:0000313|EMBL:ESK62689.1}; TaxID=1121864 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus cecorum DSM 20682 = ATCC 43198.;"
ThiF family protein
L1_008_000M1_scaffold_466_5
Enterococcus cecorum, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(5434..6543)
DNA (1110bp) protein (370aa)
Uncharacterized protein n=1 Tax=Enterococcus cecorum DSM 20682 = ATCC 43198 RepID=S1QYG4_9ENTE
Uncharacterized protein {ECO:0000313|EMBL:ESK62688.1}; TaxID=1121864 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus cecorum DSM 20682 = ATCC 43198.;"
hypothetical protein
L1_008_000M1_scaffold_466_6
Enterococcus cecorum, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6557..7948)
DNA (1392bp) protein (464aa)
Uncharacterized protein n=1 Tax=Enterococcus cecorum DSM 20682 = ATCC 43198 RepID=S1RN91_9ENTE
Uncharacterized protein {ECO:0000313|EMBL:ESK62687.1}; TaxID=1121864 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus cecorum DSM 20682 = ATCC 43198.;"
hypothetical protein
L1_008_000M1_scaffold_466_7
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8196..8564)
DNA (369bp) protein (123aa)
rumA1; 23S rRNA (uracil-5-)-methyltransferase RumA (EC:2.1.1.-)
GCN5-related N-acetyltransferase n=1 Tax=Roseburia sp. CAG:309 RepID=R6YM44_9FIRM
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:CDD34930.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_466_8
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(8713..9639)
DNA (927bp) protein (309aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z1Z2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34931.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Ribosomal protein S1
L1_008_000M1_scaffold_466_9
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(9632..10507)
DNA (876bp) protein (292aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
dimethyladenosine transferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZWQ8_9FIRM
L1_008_000M1_scaffold_466_10
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10510..11292)
DNA (783bp) protein (261aa)
hydrolase, TatD family (EC:3.1.21.-)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YG01_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34933.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_466_11
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11363..13321)
DNA (1959bp) protein (653aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01228}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
methionyl-tRNA synthetase (EC:6.1.1.10)
Methionine--tRNA ligase n=1 Tax=Roseburia sp. CAG:309 RepID=R6YU50_9FIRM
L1_008_000M1_scaffold_466_12
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13375..14259)
DNA (885bp) protein (295aa)
Probable endonuclease 4 {ECO:0000256|HAMAP-Rule:MF_00152}; EC=3.1.21.2 {ECO:0000256|HAMAP-Rule:MF_00152};; Endodeoxyribonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; Endonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Endonuclease IV (EC:3.1.21.2 3.1.21.-)
Probable endonuclease 4 n=1 Tax=Roseburia sp. CAG:309 RepID=R6YM51_9FIRM
L1_008_000M1_scaffold_466_13
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14331..15656)
DNA (1326bp) protein (442aa)
M18 family aminopeptidase {ECO:0000256|RuleBase:RU004387}; EC=3.4.11.- {ECO:0000256|RuleBase:RU004387};; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
M18 family aminopeptidase n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZWR2_9FIRM
Aspartyl aminopeptidase
L1_008_000M1_scaffold_466_14
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16003..17403)
DNA (1401bp) protein (467aa)
Transporter n=1 Tax=Roseburia sp. CAG:309 RepID=R6YG05_9FIRM
Transporter {ECO:0000313|EMBL:CDD34938.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
sodium-dependent transporter
L1_008_000M1_scaffold_466_15
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17473..19650)
DNA (2178bp) protein (726aa)
anaerobic ribonucleoside-triphosphate reductase (EC:1.17.4.2)
Anaerobic ribonucleoside-triphosphate reductase n=1 Tax=Dorea longicatena CAG:42 RepID=R7FSV0_9FIRM
Anaerobic ribonucleoside-triphosphate reductase {ECO:0000313|EMBL:CDE18369.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
L1_008_000M1_scaffold_466_16
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19901..21010)
DNA (1110bp) protein (370aa)
Chaperone protein DnaJ n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z132_9FIRM
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
molecular chaperone DnaJ
L1_008_000M1_scaffold_466_17
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21102..22982)
DNA (1881bp) protein (627aa)
Chaperone protein DnaK n=1 Tax=Roseburia sp. CAG:309 RepID=R6YL78_9FIRM
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
chaperone protein DnaK
L1_008_000M1_scaffold_466_18
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23009..23599)
DNA (591bp) protein (197aa)
Protein GrpE n=1 Tax=Roseburia sp. CAG:309 RepID=R6YT62_9FIRM
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Molecular chaperone GrpE (heat shock protein)
L1_008_000M1_scaffold_466_19
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23636..24667)
DNA (1032bp) protein (344aa)
Heat-inducible transcription repressor hrcA n=1 Tax=Roseburia sp. CAG:309 RepID=R6YF22_9FIRM
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
heat-inducible transcription repressor HrcA
L1_008_000M1_scaffold_466_20
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25221..25724)
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZVU4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34592.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_466_21
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26009..27154)
DNA (1146bp) protein (382aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z129_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD34591.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L1_008_000M1_scaffold_466_22
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27489..28385)
DNA (897bp) protein (299aa)
Peptidoglycan-binding LysM n=1 Tax=Roseburia sp. CAG:309 RepID=R6YL73_9FIRM
Peptidoglycan-binding LysM {ECO:0000313|EMBL:CDD34590.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
peptidoglycan-binding LysM
L1_008_000M1_scaffold_466_23
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28829..29401
DNA (573bp) protein (191aa)
Sporulation protein YyaC n=1 Tax=Clostridium sp. CAG:62 RepID=R7C7M6_9CLOT
Sporulation protein YyaC {ECO:0000313|EMBL:CDD73975.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
sporulation protein YyaC
L1_008_000M1_scaffold_466_24
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29366..29965)
DNA (600bp) protein (200aa)
Recombination protein RecR n=1 Tax=Roseburia sp. CAG:309 RepID=R6YT57_9FIRM
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
recombination protein RecR
L1_008_000M1_scaffold_466_25
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29965..30315)
DNA (351bp) protein (117aa)
Nucleoid-associated protein BN600_00913 n=1 Tax=Roseburia sp. CAG:309 RepID=R6YF20_9FIRM
Nucleoid-associated protein BN600_00913 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L1_008_000M1_scaffold_466_26
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30338..31903)
DNA (1566bp) protein (522aa)
DNA polymerase III, subunits gamma and tau (EC:2.7.7.7)
DNA polymerase III gamma and tau subunit n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZVU0_9FIRM
DNA polymerase III gamma and tau subunit {ECO:0000313|EMBL:CDD34587.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_466_27
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31924..32997)
DNA (1074bp) protein (358aa)
6-phosphofructokinase (EC:2.7.1.11)
6-phosphofructokinase n=1 Tax=Roseburia sp. CAG:309 RepID=R6Z126_9FIRM
6-phosphofructokinase 3 {ECO:0000313|EMBL:CDD34586.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L1_008_000M1_scaffold_466_28
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33076..35154)
DNA (2079bp) protein (693aa)
Methyl-accepting chemotaxis protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YL67_9FIRM
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:CDD34585.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Methyl-accepting chemotaxis protein
L1_008_000M1_scaffold_466_29
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35282..36574)
DNA (1293bp) protein (431aa)
Response regulator/GGDEF domain protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6YT53_9FIRM
Response regulator/GGDEF domain protein {ECO:0000313|EMBL:CDD34584.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
diguanylate cyclase (GGDEF) domain
L1_008_000M1_scaffold_466_30
Clostridium sp. CAG:167, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36720..38114)
DNA (1395bp) protein (465aa)
sulfide dehydrogenase (flavoprotein) subunit SudA (EC:1.97.-.- 1.4.1.14 1.4.1.13)
Glutamate synthase (NADPH) homotetrameric n=1 Tax=Clostridium sp. CAG:167 RepID=R5WBV4_9CLOT
Glutamate synthase (NADPH) homotetrameric {ECO:0000313|EMBL:CCZ89997.1}; TaxID=1262777 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:167.;"
Displaying items 1-30 of 40 in total

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