ggKbase home page

L1_008_000M1_scaffold_482

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_482_1
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

298..2259
DNA (1962bp) protein (654aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JUK2_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK96771.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_482_2
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2783..3130
DNA (348bp) protein (116aa)
Predicted transcriptional regulators n=4 Tax=Eubacterium RepID=D4JUK1_9FIRM
Transcriptional regulator, PadR family {ECO:0000313|EMBL:EDR99686.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Predicted transcriptional regulators
L1_008_000M1_scaffold_482_3
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3215..4027
DNA (813bp) protein (271aa)
Predicted metal-dependent hydrolase of the TIM-barrel fold n=2 Tax=root RepID=D4JUK0_9FIRM
Predicted metal-dependent hydrolase of the TIM-barrel fold
Predicted metal-dependent hydrolase of the TIM-barrel fold {ECO:0000313|EMBL:CBK96769.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_482_4
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4027..4671
DNA (645bp) protein (215aa)
Phosphopantetheinyl transferase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JUJ9_9FIRM
Phosphopantetheinyl transferase
Phosphopantetheinyl transferase {ECO:0000313|EMBL:CBK96768.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_482_5
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4786..5472
DNA (687bp) protein (229aa)
thiamine-phosphate diphosphorylase (EC:2.5.1.3)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5.1.3 {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Thiamine-phosphate synthase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JUJ8_9FIRM
L1_008_000M1_scaffold_482_6
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5489..6289
DNA (801bp) protein (267aa)
phosphomethylpyrimidine kinase (EC:2.7.4.7)
Phosphomethylpyrimidine kinase n=2 Tax=Eubacterium RepID=D4JUJ7_9FIRM
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:CDC44716.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L1_008_000M1_scaffold_482_7
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6291..7067
DNA (777bp) protein (259aa)
ABC transporter, ATP-binding protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MSC3_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDR99691.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component
L1_008_000M1_scaffold_482_8
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7064..7807
DNA (744bp) protein (248aa)
ABC transporter, permease protein n=4 Tax=root RepID=B0MSC4_9FIRM
ABC transporter permease protein {ECO:0000313|EMBL:CDC44713.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
L1_008_000M1_scaffold_482_9
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7809..8855
DNA (1047bp) protein (349aa)
NMT1/THI5-like protein n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RNQ6_9FIRM
NMT1/THI5-like protein {ECO:0000313|EMBL:CDC44711.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components
L1_008_000M1_scaffold_482_10
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8910..9320)
DNA (411bp) protein (137aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Peptide deformylase n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6R737_9FIRM
N-formylmethionyl-tRNA deformylase
L1_008_000M1_scaffold_482_11
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9911..11263
DNA (1353bp) protein (451aa)
Beta-xylosidase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JUJ2_9FIRM
Beta-xylosidase
Beta-xylosidase {ECO:0000313|EMBL:CBK96761.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_482_12
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11289..12083
DNA (795bp) protein (265aa)
AraC-type DNA-binding domain-containing proteins n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JUJ1_9FIRM
AraC-type DNA-binding domain-containing proteins
AraC-type DNA-binding domain-containing proteins {ECO:0000313|EMBL:CBK96760.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_482_13
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12095..13264
DNA (1170bp) protein (390aa)
Endoglucanase n=3 Tax=root RepID=D4JUJ0_9FIRM
Endoglucanase
Endoglucanase {ECO:0000313|EMBL:CDC44705.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L1_008_000M1_scaffold_482_14
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13594..14244)
DNA (651bp) protein (217aa)
haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E (EC:3.1.3.18)
HAD hydrolase, family IA, variant 1 n=2 Tax=root RepID=B0MQ32_9FIRM
HAD hydrolase, family IA, variant 1 {ECO:0000313|EMBL:EDS00167.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
L1_008_000M1_scaffold_482_15
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14234..15028)
DNA (795bp) protein (265aa)
uridine phosphorylase (EC:2.4.2.3)
Uridine phosphorylase {ECO:0000256|RuleBase:RU361131, ECO:0000313|EMBL:CBK96756.1}; EC=2.4.2.3 {ECO:0000256|RuleBase:RU361131, ECO:0000313|EMBL:CBK96756.1};; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Uridine phosphorylase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JUI7_9FIRM
L1_008_000M1_scaffold_482_16
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15052..15543)
DNA (492bp) protein (164aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JUI6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK96755.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_482_17
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15771..16868
DNA (1098bp) protein (366aa)
stage IV sporulation protein B (EC:3.4.21.116)
Stage IV sporulation protein B n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RH45_9FIRM
Stage IV sporulation protein B {ECO:0000313|EMBL:CDC44664.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L1_008_000M1_scaffold_482_18
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17275..18093
DNA (819bp) protein (273aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=4 Tax=Eubacterium RepID=D4MMT6_9FIRM
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Stage 0 sporulation protein A homolog {ECO:0000256|PIRNR:PIRNR002937}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L1_008_000M1_scaffold_482_19
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18158..21436)
DNA (3279bp) protein (1093aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116, ECO:0000313|EMBL:CBL34424.1};; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
carbamoyl-phosphate synthase large subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase large subunit n=3 Tax=root RepID=D4MKZ1_9FIRM
L1_008_000M1_scaffold_482_20
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21592..22398)
DNA (807bp) protein (269aa)
O-Methyltransferase involved in polyketide biosynthesis n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JUI3_9FIRM
O-Methyltransferase involved in polyketide biosynthesis
O-Methyltransferase involved in polyketide biosynthesis {ECO:0000313|EMBL:CBK96752.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_482_21
unknown

Not on your lists

comp(22846..23061)
DNA (216bp) protein (72aa)

This feature has no annotations

L1_008_000M1_scaffold_482_22
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23024..24004)
DNA (981bp) protein (327aa)
Site-specific recombinase XerD n=2 Tax=Eubacterium RepID=D4JUG3_9FIRM
Site-specific recombinase XerD
Site-specific recombinase XerD {ECO:0000313|EMBL:CDC43318.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L1_008_000M1_scaffold_482_23
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

comp(24025..25170)
DNA (1146bp) protein (382aa)
Replication initiation factor n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6DW69_9FIRM
Replication initiation factor {ECO:0000313|EMBL:CDA82212.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
hypothetical protein
L1_008_000M1_scaffold_482_24

Not on your lists

comp(25325..26008)
DNA (684bp) protein (228aa)
Zonular occludens toxin (Fragment) n=1 Tax=human gut metagenome RepID=K1S0D7_9ZZZZ
Zonular occludens toxin {ECO:0000313|EMBL:EKC47175.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_008_000M1_scaffold_482_25
unknown

Not on your lists

comp(26021..26266)
DNA (246bp) protein (82aa)

This feature has no annotations

L1_008_000M1_scaffold_482_26
unknown

Not on your lists

comp(26341..27894)
DNA (1554bp) protein (518aa)

This feature has no annotations

L1_008_000M1_scaffold_482_27
unknown

Not on your lists

comp(28001..28318)
DNA (318bp) protein (106aa)

This feature has no annotations

L1_008_000M1_scaffold_482_28
unknown

Not on your lists

comp(28570..28725)
DNA (156bp) protein (52aa)

This feature has no annotations

L1_008_000M1_scaffold_482_29
unknown

Not on your lists

comp(28740..28994)
DNA (255bp) protein (85aa)

This feature has no annotations

L1_008_000M1_scaffold_482_30
Clostridium sp. CAG:389, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29122..29343
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:389 RepID=R7LQW7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE91179.1}; TaxID=1262801 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:389.;"
hypothetical protein
Displaying items 1-30 of 49 in total

View Taxonomy