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L1_008_000M1_scaffold_513

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_513_1
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(142..1866)
DNA (1725bp) protein (575aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00011671}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00089874};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01569}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
prolyl-tRNA synthetase, family II (EC:6.1.1.15)
Proline--tRNA ligase n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6R986_9FIRM
L1_008_000M1_scaffold_513_2
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2237..2659)
DNA (423bp) protein (141aa)
Flavodoxin, short chain n=3 Tax=Eubacterium siraeum RepID=D4JU53_9FIRM
flavodoxin, short chain
Flavodoxin, short chain {ECO:0000313|EMBL:CBK96622.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_513_3
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2693..3253)
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RC97_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC45475.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
hypothetical protein
L1_008_000M1_scaffold_513_4
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3250..3540)
DNA (291bp) protein (97aa)
Uncharacterized protein conserved in bacteria (DUF2325) n=3 Tax=Eubacterium siraeum RepID=D4JU51_9FIRM
Uncharacterized protein conserved in bacteria (DUF2325).
Uncharacterized protein conserved in bacteria (DUF2325) {ECO:0000313|EMBL:CBL34617.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L1_008_000M1_scaffold_513_5
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3672..4583)
DNA (912bp) protein (304aa)
Transcriptional regulator n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JU50_9FIRM
Transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:CBK96619.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_513_6
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4723..5187
DNA (465bp) protein (155aa)
Transcriptional regulators n=2 Tax=Eubacterium RepID=D4JU49_9FIRM
Transcriptional regulators
Transcriptional regulators {ECO:0000313|EMBL:CDC45478.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L1_008_000M1_scaffold_513_7
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5196..6941
DNA (1746bp) protein (582aa)
ABC transporter permease/ATP-binding protein (EC:3.6.3.-)
ABC transporter, ATP-binding protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MLW4_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDS01287.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
L1_008_000M1_scaffold_513_8
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6960..8867
DNA (1908bp) protein (636aa)
ABC transporter, ATP-binding protein n=2 Tax=root RepID=B0MLW5_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDS01288.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
ABC-type multidrug transport system, ATPase and permease components
L1_008_000M1_scaffold_513_9
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9113..10081
DNA (969bp) protein (323aa)
Beta-mannanase (EC:3.2.1.78)
Beta-mannanase {ECO:0000313|EMBL:CBK96616.1}; EC=3.2.1.78 {ECO:0000313|EMBL:CBK96616.1};; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Beta-mannanase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JU47_9FIRM
L1_008_000M1_scaffold_513_10
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10510..14295
DNA (3786bp) protein (1262aa)
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321, ECO:0000313|EMBL:CBK96615.1}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321, ECO:0000313|EMBL:CBK96615.1};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
DNA-directed RNA polymerase subunit beta n=3 Tax=root RepID=D4JU46_9FIRM
L1_008_000M1_scaffold_513_11
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14382..17969
DNA (3588bp) protein (1196aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
rpoC; DNA-directed RNA polymerase, beta' subunit (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RQZ4_9FIRM
L1_008_000M1_scaffold_513_12
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


18141..18569
DNA (429bp) protein (143aa)
30S ribosomal protein S12 n=3 Tax=root RepID=B0MLX1_9FIRM
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
SSU ribosomal protein S12P
L1_008_000M1_scaffold_513_13
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


18690..19160
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6R997_9FIRM
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
SSU ribosomal protein S7P
L1_008_000M1_scaffold_513_14
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19180..21258
DNA (2079bp) protein (693aa)
translation elongation factor 2 (EF-2/EF-G) (EC:3.6.5.3)
Elongation factor G n=8 Tax=root RepID=D4JU44_9FIRM
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L1_008_000M1_scaffold_513_15
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21360..22562
DNA (1203bp) protein (401aa)
translation elongation factor 1A (EF-1A/EF-Tu) (EC:3.6.5.3)
Elongation factor Tu n=6 Tax=root RepID=D4JU43_9FIRM
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L1_008_000M1_scaffold_513_16
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22649..23965
DNA (1317bp) protein (439aa)
Uncharacterized domain HDIG n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MLJ5_9FIRM
uncharacterized domain HDIG
Uncharacterized domain HDIG {ECO:0000313|EMBL:CBL34628.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L1_008_000M1_scaffold_513_17
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23984..25000
DNA (1017bp) protein (339aa)
Rod shape-determining protein MreB n=4 Tax=root RepID=D4JU41_9FIRM
rod shape-determining protein MreB
Rod shape-determining protein MreB {ECO:0000313|EMBL:CDC45497.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L1_008_000M1_scaffold_513_18
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25141..25917
DNA (777bp) protein (259aa)
Predicted esterase (EC:3.1.1.-)
Predicted esterase {ECO:0000313|EMBL:CBL34630.1}; EC=3.1.1.- {ECO:0000313|EMBL:CBL34630.1};; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
Predicted esterase n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MLJ7_9FIRM
L1_008_000M1_scaffold_513_19
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25968..26558)
DNA (591bp) protein (197aa)
Putative stage V sporulation protein T n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MLX8_9FIRM
Putative stage V sporulation protein T {ECO:0000313|EMBL:EDS01301.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
transcriptional regulator, AbrB family
L1_008_000M1_scaffold_513_20
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26724..27176
DNA (453bp) protein (151aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
putative deaminase (EC:3.5.4.-)
Cytidine and deoxycytidylate deaminase zinc-binding region n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MLX9_9FIRM
L1_008_000M1_scaffold_513_21
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27166..27294)
DNA (129bp) protein (43aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JU38_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK96607.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_513_22
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27319..27984)
DNA (666bp) protein (222aa)
Helix-turn-helix n=4 Tax=root RepID=D4JU37_9FIRM
Helix-turn-helix.
Helix-turn-helix {ECO:0000313|EMBL:CBK96606.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_513_23
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28173..28781
DNA (609bp) protein (203aa)
Fructose-2,6-bisphosphatase (EC:3.1.3.73 5.4.2.1)
Fructose-2,6-bisphosphatase n=2 Tax=Eubacterium RepID=D4MLK1_9FIRM
Fructose-2 6-bisphosphatase {ECO:0000313|EMBL:CDC45521.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L1_008_000M1_scaffold_513_24
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28799..30940
DNA (2142bp) protein (714aa)
Tex-like protein N-terminal domain protein n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6SFZ5_9FIRM
Tex-like protein N-terminal domain protein {ECO:0000313|EMBL:CDC45522.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Transcriptional accessory protein
L1_008_000M1_scaffold_513_25
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30942..31457
DNA (516bp) protein (172aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JU34_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK96603.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_513_26
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31450..32106
DNA (657bp) protein (219aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RJT6_9FIRM
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CDC45524.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
hypothetical protein
L1_008_000M1_scaffold_513_27
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32260..33195
DNA (936bp) protein (312aa)
Mg2+ and Co2+ transporters n=3 Tax=root RepID=D4JU32_9FIRM
Mg2+ and Co2+ transporters
Mg2+ and Co2+ transporters {ECO:0000313|EMBL:CBK96601.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_513_28
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33210..34205
DNA (996bp) protein (332aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JU31_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK96600.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_008_000M1_scaffold_513_29
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34202..36247
DNA (2046bp) protein (682aa)
Collagenase and related proteases {ECO:0000313|EMBL:CBK96599.1}; EC=3.4.-.- {ECO:0000313|EMBL:CBK96599.1};; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Collagenase and related proteases (EC:3.4.-.-)
Collagenase and related proteases n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JU30_9FIRM
L1_008_000M1_scaffold_513_30
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36247..36684
DNA (438bp) protein (146aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071036};; dUTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00116}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23)
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6R9G5_9FIRM
Displaying items 1-30 of 40 in total

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