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L1_008_000M1_scaffold_515

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_515_1
Paenibacillus lactis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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3..92
DNA (90bp) protein (30aa)
Putative uncharacterized protein (Fragment) n=1 Tax=Paenibacillus lactis 154 RepID=G4HPA0_9BACL
Putative uncharacterized protein {ECO:0000313|EMBL:EHB48545.1}; Flags: Fragment;; TaxID=743719 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus lactis 154.;"
L1_008_000M1_scaffold_515_2
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(429..1172)
DNA (744bp) protein (248aa)
TIGR00268 family protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PHA4_9FIRM
TIGR00268 family protein {ECO:0000313|EMBL:ERK43129.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
L1_008_000M1_scaffold_515_3
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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1569..1805
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:182 RepID=R7QW07_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF41636.1}; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
hypothetical protein
L1_008_000M1_scaffold_515_4
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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2050..4419
DNA (2370bp) protein (790aa)
DEAD_2 n=1 Tax=Roseburia sp. CAG:45 RepID=R6P077_9FIRM
DEAD_2 {ECO:0000313|EMBL:CDC14044.1}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
DEAD_2.
L1_008_000M1_scaffold_515_5
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4426..5319)
DNA (894bp) protein (298aa)
LysR substrate binding domain protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FRP6_9FIRM
Transcriptional regulator
LysR substrate binding domain protein {ECO:0000313|EMBL:EEG94721.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
L1_008_000M1_scaffold_515_6
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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5541..9326
DNA (3786bp) protein (1262aa)
Phosphoribosylformylglycinamidine synthase n=2 Tax=root RepID=G2T179_ROSHA
Phosphoribosylformylglycinamidine synthase {ECO:0000313|EMBL:AEN96148.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
phosphoribosylformylglycinamidine synthase
L1_008_000M1_scaffold_515_7
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9379..9690
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7CBJ8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD74683.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
Methylase involved in ubiquinone/menaquinone biosynthesis
L1_008_000M1_scaffold_515_8
unknown

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10904..11056
DNA (153bp) protein (51aa)

This feature has no annotations

L1_008_000M1_scaffold_515_9
unknown

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11056..11718
DNA (663bp) protein (221aa)

This feature has no annotations

L1_008_000M1_scaffold_515_10
[Eubacterium] eligens, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12192..12518
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) RepID=C4Z3R8_EUBE2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR72743.1}; TaxID=515620 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium eligens (strain ATCC 27750 / VPI C15-48).;"
L1_008_000M1_scaffold_515_11
Clostridium sp. CAG:590, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12741..13655
DNA (915bp) protein (305aa)
Putative dTDP-glucose 4 6-dehydratase n=1 Tax=Clostridium sp. CAG:590 RepID=R5EE83_9CLOT
Putative dTDP-glucose 4 6-dehydratase {ECO:0000313|EMBL:CCX89614.1}; TaxID=1262825 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:590.;"
dTDP-glucose 4,6-dehydratase
L1_008_000M1_scaffold_515_12
Clostridium carboxidivorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13912..14358
DNA (447bp) protein (149aa)
GCN5 family acetyltransferase n=1 Tax=Clostridium tunisiense RepID=UPI0002EFA802
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:EET89024.1}; TaxID=536227 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium carboxidivorans P7.;"
GCN5-related N-acetyltransferase
L1_008_000M1_scaffold_515_13
Firmicutes bacterium CAG:212, Firmicutes, Bacteria

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14924..15700
DNA (777bp) protein (259aa)
Predicted divalent heavy-metal cations transporter n=1 Tax=Firmicutes bacterium CAG:212 RepID=R5XIF1_9FIRM
Predicted divalent heavy-metal cations transporter {ECO:0000313|EMBL:CDA15283.1}; TaxID=1263009 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:212.;"
Predicted divalent heavy-metal cations transporter
L1_008_000M1_scaffold_515_14
Firmicutes bacterium CAG:212, Firmicutes, Bacteria

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16049..16384
DNA (336bp) protein (112aa)
CjaA protein n=1 Tax=Firmicutes bacterium CAG:212 RepID=R5XSJ8_9FIRM
CjaA protein {ECO:0000313|EMBL:CDA15479.1}; TaxID=1263009 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:212.;"
amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-)
L1_008_000M1_scaffold_515_15
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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16422..16637
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HKX7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY30243.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
amino acid ABC transporter permease
L1_008_000M1_scaffold_515_16
Firmicutes bacterium CAG:194, Firmicutes, Bacteria

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16665..16970
DNA (306bp) protein (102aa)
ABC transporter ATP-binding protein n=1 Tax=Firmicutes bacterium CAG:194 RepID=R5QJQ0_9FIRM
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CCZ28930.1}; TaxID=1263008 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:194.;"
artM1; Arginine transport ATP-binding protein ArtM
L1_008_000M1_scaffold_515_17
Firmicutes bacterium CAG:882, Firmicutes, Bacteria

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17044..17697
DNA (654bp) protein (218aa)
Probable transaldolase {ECO:0000256|HAMAP-Rule:MF_00494}; EC=2.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00494};; TaxID=1262991 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:882.;"
transaldolase, putative, TalC family (EC:2.2.1.2)
Probable transaldolase n=1 Tax=Firmicutes bacterium CAG:882 RepID=R7BLG0_9FIRM
L1_008_000M1_scaffold_515_18
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18364..19461)
DNA (1098bp) protein (366aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
chorismate synthase (EC:4.2.3.5)
Chorismate synthase n=1 Tax=Roseburia sp. CAG:45 RepID=R6NZ56_9FIRM
L1_008_000M1_scaffold_515_19
Lachnospiraceae bacterium A2, Clostridiales, Clostridia, Firmicutes, Bacteria

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19592..20746
DNA (1155bp) protein (385aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=397290 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A2.;"
tgt; queuine tRNA-ribosyltransferase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase n=1 Tax=Lachnospiraceae bacterium A2 RepID=R9KGN6_9FIRM
L1_008_000M1_scaffold_515_20
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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20838..21155
DNA (318bp) protein (106aa)
Protein translocase subunit yajC n=4 Tax=Roseburia RepID=D4KNK8_9FIRM
protein translocase subunit yajC
Protein translocase subunit yajC {ECO:0000313|EMBL:CDA56873.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000M1_scaffold_515_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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21353..22459
DNA (1107bp) protein (369aa)
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
3-isopropylmalate dehydrogenase n=5 Tax=Roseburia RepID=D4KNL5_9FIRM
L1_008_000M1_scaffold_515_22
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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22471..24138
DNA (1668bp) protein (556aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase n=1 Tax=Roseburia sp. CAG:45 RepID=R6P5D3_9FIRM
L1_008_000M1_scaffold_515_23
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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24167..25852
DNA (1686bp) protein (562aa)
Acetolactate synthase {ECO:0000256|RuleBase:RU003591}; EC=2.2.1.6 {ECO:0000256|RuleBase:RU003591};; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
acetolactate synthase, large subunit, biosynthetic type (EC:2.2.1.6)
Acetolactate synthase n=1 Tax=Roseburia sp. CAG:45 RepID=R6NR63_9FIRM
L1_008_000M1_scaffold_515_24
Firmicutes bacterium CAG:65, Firmicutes, Bacteria

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25928..27010
DNA (1083bp) protein (361aa)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160};; Phosphohydroxythreonine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; TaxID=1262994 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:65.;"
phosphoserine aminotransferase (EC:2.6.1.52)
Phosphoserine aminotransferase n=3 Tax=root RepID=R6EKX0_9FIRM
L1_008_000M1_scaffold_515_25
Eubacterium sp. 14-2, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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27010..28173
DNA (1164bp) protein (388aa)
D-3-phosphoglycerate dehydrogenase n=1 Tax=Eubacterium sp. 14-2 RepID=S0JG72_9FIRM
D-3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:EOT27550.1}; TaxID=1235790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 14-2.;"
hypothetical protein
L1_008_000M1_scaffold_515_26
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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28199..29455
DNA (1257bp) protein (419aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:45 RepID=R6PVC2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC13702.1}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
hypothetical protein
L1_008_000M1_scaffold_515_27
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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29470..30312
DNA (843bp) protein (281aa)
Small-conductance mechanosensitive channel n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BNA1_9FIRM
Small-conductance mechanosensitive channel {ECO:0000313|EMBL:CDA54812.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Small-conductance mechanosensitive channel
L1_008_000M1_scaffold_515_28
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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30482..31081
DNA (600bp) protein (200aa)
Transcriptional regulator TetR family n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NMA5_9FIRM
Transcriptional regulator TetR family {ECO:0000313|EMBL:CCY98127.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
transcriptional regulator, TetR family
L1_008_000M1_scaffold_515_29
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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31157..32116
DNA (960bp) protein (320aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
Putative ribosome biogenesis GTPase RsgA n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7EU19_9FIRM
putative GTPase related to EngC
L1_008_000M1_scaffold_515_30
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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32097..32441
DNA (345bp) protein (115aa)
Methyltransferase domain protein n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AK02_9CLOT
Methyltransferase domain protein {ECO:0000313|EMBL:CCX42169.1}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
SmtA; SAM-dependent methyltransferases
Displaying items 1-30 of 50 in total

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