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L1_008_000M1_scaffold_528

Search features with annotation key words

Displaying items 1-30 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_528_1
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..843)
-----------------
DNA (843bp)
protein (281aa)
Molybdenum ABC transporter n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CRN5_9FIRM
Molybdenum ABC transporter {ECO:0000313|EMBL:CDD80108.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
molybdenum ABC transporter, periplasmic molybdate-binding protein
L1_008_000M1_scaffold_528_2
unknown

Not on your lists

1071..1178
-----------------
DNA (108bp)
protein (36aa)

This feature has no annotations

L1_008_000M1_scaffold_528_3
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1171..2109
-----------------
DNA (939bp)
protein (313aa)
Excisionase family DNA binding domain-containing protein n=2 Tax=Ruminococcus RepID=C6JDT5_9FIRM
Periplasmic molybdate-binding protein {ECO:0000313|EMBL:CDD80111.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
DNA binding domain, excisionase family
L1_008_000M1_scaffold_528_4
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2199..3215)
-----------------
DNA (1017bp)
protein (339aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Undecaprenyl-diphosphatase (EC:3.6.1.27)
Undecaprenyl-diphosphatase n=2 Tax=Ruminococcus RepID=C6JDT6_9FIRM
L1_008_000M1_scaffold_528_5
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3387..5558)
-----------------
DNA (2172bp)
protein (724aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
carbamoyl-phosphate synthase, large subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase large chain n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CQ62_9FIRM
L1_008_000M1_scaffold_528_6
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5540..6472)
-----------------
DNA (933bp)
protein (311aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
carbamoyl-phosphate synthase, large subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase large chain n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDT7_9FIRM
L1_008_000M1_scaffold_528_7
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6472..7470)
-----------------
DNA (999bp)
protein (333aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
carbamoyl-phosphate synthase, small subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase small chain n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CR17_9FIRM
L1_008_000M1_scaffold_528_8
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8018..9145)
-----------------
DNA (1128bp)
protein (376aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CQ68_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80120.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Beta-mannanase
L1_008_000M1_scaffold_528_9
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9301..10806)
-----------------
DNA (1506bp)
protein (502aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CQA1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80121.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
N-acetylmuramoyl-L-alanine amidase
L1_008_000M1_scaffold_528_10
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10945..11532)
-----------------
DNA (588bp)
protein (196aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDU1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76840.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L1_008_000M1_scaffold_528_11
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11588..13006)
-----------------
DNA (1419bp)
protein (473aa)
ATP-dependent Clp protease, ATP-binding subunit ClpX n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDU2_9FIRM
ATP-dependent Clp protease, ATP-binding subunit ClpX {ECO:0000313|EMBL:EES76841.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
endopeptidase Clp ATP-binding regulatory subunit (clpX)
L1_008_000M1_scaffold_528_12
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13296..14711)
-----------------
DNA (1416bp)
protein (472aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CQA7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80126.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
L1_008_000M1_scaffold_528_13
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14908..15852)
-----------------
DNA (945bp)
protein (315aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JDU4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80127.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Glycosyltransferases, probably involved in cell wall biogenesis
L1_008_000M1_scaffold_528_14
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15941..17359)
-----------------
DNA (1419bp)
protein (473aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CRQ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80128.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
cell envelope-related function transcriptional attenuator common domain
L1_008_000M1_scaffold_528_15
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17377..18780)
-----------------
DNA (1404bp)
protein (468aa)
Undecaprenyl-phosphate glucose phosphotransferase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDU6_9FIRM
Undecaprenyl-phosphate glucose phosphotransferase {ECO:0000313|EMBL:EES76845.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Undecaprenyl-phosphate glucose phosphotransferase
L1_008_000M1_scaffold_528_16
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18864..19820)
-----------------
DNA (957bp)
protein (319aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDU7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76846.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Predicted glycosyltransferases
L1_008_000M1_scaffold_528_17
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19802..21709)
-----------------
DNA (1908bp)
protein (636aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDU8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76847.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Predicted glycosyltransferases
L1_008_000M1_scaffold_528_18
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21887..23167
-----------------
DNA (1281bp)
protein (427aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDU9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76848.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L1_008_000M1_scaffold_528_19
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23274..24734)
-----------------
DNA (1461bp)
protein (487aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDV0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76849.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Predicted membrane protein (DUF2142).
L1_008_000M1_scaffold_528_20
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24753..27197)
-----------------
DNA (2445bp)
protein (815aa)
Glycosyl transferase n=1 Tax=Ruminococcus sp. CAG:9 PF3_9FIRM">RepID=R7CPF3_9FIRM
Glycosyl transferase {ECO:0000313|EMBL:CDD80134.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Predicted glycosyltransferases
L1_008_000M1_scaffold_528_21
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27199..29742)
-----------------
DNA (2544bp)
protein (848aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDV2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76851.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Predicted glycosyltransferases
L1_008_000M1_scaffold_528_22
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29709..31901)
-----------------
DNA (2193bp)
protein (731aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDV3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76852.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Dimethyladenosine transferase (rRNA methylation)
L1_008_000M1_scaffold_528_23
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31957..33237)
-----------------
DNA (1281bp)
protein (427aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CPG0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80139.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
ABC-type polysaccharide/polyol phosphate transport system, ATPase component
L1_008_000M1_scaffold_528_24
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33296..34111)
-----------------
DNA (816bp)
protein (272aa)
ABC-2 type transporter n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CQC3_9FIRM
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
ABC-type polysaccharide/polyol phosphate export systems, permease component
L1_008_000M1_scaffold_528_25
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34124..34678)
-----------------
DNA (555bp)
protein (185aa)
dTDP-4-dehydrorhamnose 3,5-epimerase (EC:5.1.3.13)
dTDP-4-dehydrorhamnose 3,5-epimerase n=2 Tax=Ruminococcus RepID=C6JDV6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80143.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L1_008_000M1_scaffold_528_26
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34755..36056)
-----------------
DNA (1302bp)
protein (434aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDV7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76856.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
D-alanyl-D-alanine carboxypeptidase
L1_008_000M1_scaffold_528_27
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36142..37272)
-----------------
DNA (1131bp)
protein (377aa)
TDP-4-keto-6-deoxy-D-glucose transaminase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDV8_9FIRM
TDP-4-keto-6-deoxy-D-glucose transaminase {ECO:0000313|EMBL:EES76857.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
TDP-4-keto-6-deoxy-D-glucose transaminase
L1_008_000M1_scaffold_528_28
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37265..38563)
-----------------
DNA (1299bp)
protein (433aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDV9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76858.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Carbamoylphosphate synthase large subunit (split gene in MJ)
L1_008_000M1_scaffold_528_29
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38560..39522)
-----------------
DNA (963bp)
protein (321aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDW0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76859.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L1_008_000M1_scaffold_528_30
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(39522..40457)
-----------------
DNA (936bp)
protein (312aa)
Glycosyltransferases involved in cell wall biogenesis (EC:2.7.8.- 2.4.1.83)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JDW1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76860.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Displaying items 1-30 of 61 in total

View Taxonomy