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L1_008_000M1_scaffold_540

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_540_1
unknown

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180..902
DNA (723bp) protein (241aa)

This feature has no annotations

L1_008_000M1_scaffold_540_2
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

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995..2350
DNA (1356bp) protein (452aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
Phosphoglucosamine mutase n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HAY3_9FIRM
CpsG; phosphomannomutase
L1_008_000M1_scaffold_540_3
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

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2352..3011
DNA (660bp) protein (220aa)
Putative UDP-N-acetylglucosamine diphosphorylase n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HPA2_9FIRM
Putative UDP-N-acetylglucosamine diphosphorylase {ECO:0000313|EMBL:CCY26677.1}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
putative UDP-N-acetylglucosamine diphosphorylase
L1_008_000M1_scaffold_540_4
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

Not on your lists

3032..3943
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HQ80_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY26676.1}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
hypothetical protein
L1_008_000M1_scaffold_540_5
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

Not on your lists

comp(3989..4438)
DNA (450bp) protein (150aa)
ABC transporter ATP-binding protein n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HAF3_9FIRM
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CCY26675.1}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
L1_008_000M1_scaffold_540_6
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

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4654..5313
DNA (660bp) protein (220aa)
L-serine dehydratase, iron-sulfur-dependent subunit beta (EC:4.3.1.17)
L-serine dehydratase iron-sulfur-dependent beta subunit n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HEY9_9FIRM
L-serine dehydratase iron-sulfur-dependent beta subunit {ECO:0000313|EMBL:CCY26674.1}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
L1_008_000M1_scaffold_540_7
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

Not on your lists

5326..6207
DNA (882bp) protein (294aa)
L-serine dehydratase, iron-sulfur-dependent subunit alpha (EC:4.3.1.17)
L-serine ammonia-lyase n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HAX9_9FIRM
L-serine ammonia-lyase {ECO:0000313|EMBL:CCY26673.1}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
L1_008_000M1_scaffold_540_8
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

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comp(6321..7250)
DNA (930bp) protein (310aa)
Elongation factor Ts n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HP97_9FIRM
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
tsf; elongation factor Ts
L1_008_000M1_scaffold_540_9
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

Not on your lists


comp(7341..8072)
DNA (732bp) protein (244aa)
30S ribosomal protein S2 n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HQ75_9FIRM
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
rpsB; 30S ribosomal protein S2
L1_008_000M1_scaffold_540_10
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

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8433..9269
DNA (837bp) protein (279aa)
RNA polymerase sigma factor n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HAF0_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
putative RNA polymerase sigma factor
L1_008_000M1_scaffold_540_11

Not on your lists

comp(9277..9987)
DNA (711bp) protein (237aa)
Uncharacterized protein (Fragment) n=1 Tax=human gut metagenome RepID=K1RZG2_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC50768.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_008_000M1_scaffold_540_12
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

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comp(10025..10402)
DNA (378bp) protein (126aa)
Transcriptional regulator PadR family n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HAX4_9FIRM
Transcriptional regulator PadR family {ECO:0000313|EMBL:CCY26668.1}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
PadR family transcriptional regulator
L1_008_000M1_scaffold_540_13
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

Not on your lists

comp(10511..10942)
DNA (432bp) protein (144aa)
ACT domain-containing protein n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HP94_9FIRM
ACT domain-containing protein {ECO:0000313|EMBL:CCY26667.1}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
ACT domain-containing protein
L1_008_000M1_scaffold_540_14
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

Not on your lists

comp(10955..12259)
DNA (1305bp) protein (435aa)
Phenylacetate-coenzyme A ligase {ECO:0000256|PIRNR:PIRNR006444}; EC=6.2.1.30 {ECO:0000256|PIRNR:PIRNR006444};; Phenylacetyl-CoA ligase {ECO:0000256|PIRNR:PIRNR006444}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HQ70_9FIRM
hypothetical protein
L1_008_000M1_scaffold_540_15
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

Not on your lists

12679..13347
DNA (669bp) protein (223aa)
Channel protein hemolysin III family n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HAE6_9FIRM
Channel protein hemolysin III family {ECO:0000313|EMBL:CCY26665.1}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
channel protein, hemolysin III family
L1_008_000M1_scaffold_540_16
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

Not on your lists

13378..14247
DNA (870bp) protein (290aa)
EDD domain protein DegV family n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HEY1_9FIRM
EDD domain protein DegV family {ECO:0000313|EMBL:CCY26664.1}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
hypothetical protein
L1_008_000M1_scaffold_540_17
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

Not on your lists

comp(14376..16751)
DNA (2376bp) protein (792aa)
Clp protease ATP-binding subunit ClpC n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HAW9_9FIRM
Clp protease ATP-binding subunit ClpC {ECO:0000313|EMBL:CCY26663.1}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
clpE; ATP-dependent Clp protease ATP-binding subunit ClpE
L1_008_000M1_scaffold_540_18
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

Not on your lists

comp(16841..17524)
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HP91_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY26662.1}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
hypothetical protein
L1_008_000M1_scaffold_540_19
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17524..18717)
DNA (1194bp) protein (398aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YNC1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM53528.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
hypothetical protein
L1_008_000M1_scaffold_540_20
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

Not on your lists

comp(18755..19507)
DNA (753bp) protein (251aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
truA; tRNA pseudouridine synthase TruA (EC:5.4.99.12)
tRNA pseudouridine synthase A n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HQ64_9FIRM
L1_008_000M1_scaffold_540_21
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

Not on your lists

comp(19521..20327)
DNA (807bp) protein (269aa)
Energy-coupling factor transporter transmembrane protein EcfT n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HAE1_9FIRM
Energy-coupling factor transporter transmembrane protein EcfT {ECO:0000256|HAMAP-Rule:MF_01461}; Short=ECF transporter T component EcfT {ECO:0000256|HAMAP-Rule:MF_01461};; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
putative cobalt ABC transporter permease protein
L1_008_000M1_scaffold_540_22
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

Not on your lists

comp(20328..21194)
DNA (867bp) protein (289aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
Cobalt ABC transporter ATP-binding protein n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HEX4_9FIRM
putative cobalt ABC transporter ATP-binding protein
L1_008_000M1_scaffold_540_23
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

Not on your lists

comp(21233..22075)
DNA (843bp) protein (281aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
Cobalt ABC transporter ATP-binding protein n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HAW5_9FIRM
putative cobalt ABC transporter ATP-binding protein
L1_008_000M1_scaffold_540_24
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

Not on your lists

comp(22086..22955)
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HP87_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY26657.1}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
hypothetical protein
L1_008_000M1_scaffold_540_25
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

Not on your lists

23247..23894
DNA (648bp) protein (216aa)
Putative Fe-S oxidoreductase n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HQ59_9FIRM
Putative Fe-S oxidoreductase {ECO:0000313|EMBL:CCY26656.1}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
signal recognition particle GTPase
L1_008_000M1_scaffold_540_26
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

Not on your lists

comp(23996..26227)
DNA (2232bp) protein (744aa)
Polysaccharide pyruvyl transferase CsaB n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HAD6_9FIRM
Polysaccharide pyruvyl transferase CsaB {ECO:0000313|EMBL:CCY26655.1}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
putative polysaccharide pyruvyl transferase
L1_008_000M1_scaffold_540_27
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

Not on your lists

26319..26861
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HEX0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY26654.1}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
hypothetical protein
L1_008_000M1_scaffold_540_28
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

Not on your lists

comp(26919..27557)
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HAW3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY26653.1}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
hypothetical protein
L1_008_000M1_scaffold_540_29
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

Not on your lists

comp(27573..28277)
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HP82_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY26652.1}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
hypothetical protein
L1_008_000M1_scaffold_540_30
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

Not on your lists

comp(28415..28678)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HQ55_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY26651.1}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
hypothetical protein
Displaying items 1-30 of 47 in total

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