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L1_008_000M1_scaffold_559

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Displaying items 1-30 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_559_1
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(263..1498)
DNA (1236bp) protein (412aa)
Collagenase and related proteases (EC:3.4.-.-)
Peptidase, U32 family n=5 Tax=Clostridiales RepID=A5KMV8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG87669.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
L1_008_000M1_scaffold_559_2
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1561..2226)
DNA (666bp) protein (222aa)
O-methyltransferase n=5 Tax=Clostridiales RepID=A5KMV7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25854.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Predicted O-methyltransferase
L1_008_000M1_scaffold_559_3
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2230..3900)
DNA (1671bp) protein (557aa)
Metallo-beta-lactamase n=5 Tax=Clostridiales RepID=E5XI79_9FIRM
Metallo-beta-lactamase {ECO:0000313|EMBL:EFV19030.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
putative hydrolase of the metallo-beta-lactamase superfamily protein
L1_008_000M1_scaffold_559_4
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3917..4378)
DNA (462bp) protein (154aa)
Transcriptional regulator, Fur family n=5 Tax=Clostridiales RepID=A5KMV5_9FIRM
Fur3 protein {ECO:0000313|EMBL:EFV19029.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
Fe2+/Zn2+ uptake regulation proteins
L1_008_000M1_scaffold_559_5
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4526..4786)
DNA (261bp) protein (87aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KMV4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25857.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Protein of unknown function (DUF1292).
L1_008_000M1_scaffold_559_6
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4944..5381)
DNA (438bp) protein (146aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
Putative Holliday junction resolvase n=4 Tax=Lachnospiraceae RepID=A5KMV3_9FIRM
conserved hypothetical protein TIGR00250
L1_008_000M1_scaffold_559_7
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5388..5651)
DNA (264bp) protein (88aa)
UPF0297 protein RUMTOR_01575 n=5 Tax=Clostridiales RepID=A5KMV2_9FIRM
UPF0297 protein HMPREF1026_01830 {ECO:0000256|HAMAP-Rule:MF_01507}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
hypothetical protein
L1_008_000M1_scaffold_559_8
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5766..7061)
DNA (1296bp) protein (432aa)
tRNA methylthiotransferase YqeV n=5 Tax=Clostridiales RepID=A5KMV1_9FIRM
tRNA methylthiotransferase YqeV {ECO:0000313|EMBL:EDK24320.1}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
MiaB-like tRNA modifying enzyme
L1_008_000M1_scaffold_559_9
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7181..7414
DNA (234bp) protein (78aa)
PTS HPr component phosphorylation site n=5 Tax=Clostridiales RepID=A5KMV0_9FIRM
PTS HPr component phosphorylation site {ECO:0000313|EMBL:EDK24319.1}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
PTS HPr component phosphorylation site.
L1_008_000M1_scaffold_559_10
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7573..8757)
DNA (1185bp) protein (395aa)
Probable tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094284}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094270};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; Thiamine biosynthesis protein ThiI {ECO:0000256|HAMAP-Rule:MF_00021}; tRNA 4-thiouridine synthase {ECO:0000256|HAMAP-Rule:MF_00021}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
Probable tRNA sulfurtransferase n=5 Tax=Clostridiales RepID=A5KMU9_9FIRM
thiazole biosynthesis/tRNA modification protein ThiI
L1_008_000M1_scaffold_559_11
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8800..9957)
DNA (1158bp) protein (386aa)
Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes (EC:2.8.1.7)
Aminotransferase, class V n=5 Tax=Clostridiales RepID=A5KMU7_9FIRM
Cysteine desulfurase {ECO:0000313|EMBL:EFV19022.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
L1_008_000M1_scaffold_559_12
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9992..10759)
DNA (768bp) protein (256aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
RNA methyltransferase, RsmE family (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase E n=5 Tax=Clostridiales RepID=A5KMU6_9FIRM
L1_008_000M1_scaffold_559_13
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10779..11732)
DNA (954bp) protein (318aa)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
[LSU ribosomal protein L11P]-lysine N-methyltransferase (EC:2.1.1.-)
Ribosomal protein L11 methyltransferase n=4 Tax=Clostridiales RepID=A5KMU5_9FIRM
L1_008_000M1_scaffold_559_14
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11736..12755)
DNA (1020bp) protein (340aa)
Glycosyl hydrolase family 25 n=5 Tax=Clostridiales RepID=A5KMU4_9FIRM
Glycosyl hydrolase family 25 {ECO:0000313|EMBL:CCZ25866.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Lyzozyme M1 (1,4-beta-N-acetylmuramidase)
L1_008_000M1_scaffold_559_15
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12834..13298)
DNA (465bp) protein (155aa)
MOSC domain protein n=5 Tax=Clostridiales RepID=A5KMU3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25867.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
hypothetical protein
L1_008_000M1_scaffold_559_16
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13379..14350)
DNA (972bp) protein (324aa)
Cyclic pyranopterin phosphate synthase {ECO:0000256|SAAS:SAAS00064088}; EC=4.1.99.18 {ECO:0000256|SAAS:SAAS00064088};; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Molybdenum cofactor biosynthesis protein A n=4 Tax=Clostridiales RepID=E5XI66_9FIRM
GTP cyclohydrolase subunit MoaA
L1_008_000M1_scaffold_559_17
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14347..15423)
DNA (1077bp) protein (359aa)
Molybdenum cofactor biosynthesis protein C n=4 Tax=Clostridiales RepID=A5KMU1_9FIRM
Molybdenum cofactor biosynthesis protein C {ECO:0000313|EMBL:CCZ25869.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
molybdenum cofactor synthesis domain
L1_008_000M1_scaffold_559_18
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15580..17517)
DNA (1938bp) protein (646aa)
NADH oxidase n=4 Tax=Clostridiales RepID=A5KMT9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25870.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
NADH-flavin oxidoreductase, Old yellow enzyme family
L1_008_000M1_scaffold_559_19
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17543..18541)
DNA (999bp) protein (333aa)
Putative uncharacterized protein n=3 Tax=unclassified Lachnospiraceae RepID=E5XI63_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV19014.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
NmrA-like protein
L1_008_000M1_scaffold_559_20
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18570..19469)
DNA (900bp) protein (300aa)
Transcriptional regulator, LysR family n=4 Tax=Clostridiales RepID=A5KMT7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25872.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
transcriptional regulator
L1_008_000M1_scaffold_559_21
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19974..21809)
DNA (1836bp) protein (612aa)
ABC transporter, ATP-binding protein n=5 Tax=Clostridiales RepID=A5KMT6_9FIRM
ABC transporter {ECO:0000313|EMBL:EFV19012.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
ABC-type multidrug transport system, ATPase and permease components
L1_008_000M1_scaffold_559_22
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21802..24126)
DNA (2325bp) protein (775aa)
ABC transporter, ATP-binding protein n=4 Tax=Lachnospiraceae RepID=A5KMT5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG87692.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
ABC-type multidrug transport system, ATPase and permease components
L1_008_000M1_scaffold_559_23
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24123..24578)
DNA (456bp) protein (152aa)
Transcriptional regulator, MarR family n=5 Tax=Clostridiales RepID=A5KMT4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25875.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
MarR family transcriptional regulator
L1_008_000M1_scaffold_559_24
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24715..25878)
DNA (1164bp) protein (388aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KMT3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV19009.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
hypothetical protein
L1_008_000M1_scaffold_559_25
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26210..27550
DNA (1341bp) protein (447aa)
MATE efflux family protein n=5 Tax=Clostridiales RepID=A5KMT1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25877.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
putative efflux protein, MATE family
L1_008_000M1_scaffold_559_26
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27626..28378)
DNA (753bp) protein (251aa)
Pyruvate formate-lyase-activating enzyme {ECO:0000256|RuleBase:RU362053}; EC=1.97.1.4 {ECO:0000256|RuleBase:RU362053};; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
pyruvate formate-lyase 1-activating enzyme (EC:1.97.1.4)
Pyruvate formate-lyase 1-activating enzyme n=5 Tax=Clostridiales RepID=A5KMT0_9FIRM
L1_008_000M1_scaffold_559_27
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28585..30837)
DNA (2253bp) protein (751aa)
formate acetyltransferase 1 (EC:2.3.1.54)
Formate C-acetyltransferase n=5 Tax=Clostridiales RepID=A5KMS9_9FIRM
Formate acetyltransferase {ECO:0000313|EMBL:EFV19006.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
L1_008_000M1_scaffold_559_28
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31121..32452)
DNA (1332bp) protein (444aa)
MATE efflux family protein n=5 Tax=Clostridiales RepID=E5XI54_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25880.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Na+-driven multidrug efflux pump
L1_008_000M1_scaffold_559_29
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32449..32940)
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Ruminococcus torques CAG:61 RepID=R5QUG2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25881.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
hypothetical protein
L1_008_000M1_scaffold_559_30
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33231..33725
DNA (495bp) protein (165aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KMS5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG87700.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
hypothetical protein
Displaying items 1-30 of 59 in total

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