ggKbase home page

L1_008_000M1_scaffold_563

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_563_1
Alistipes finegoldii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(3..1196)
DNA (1194bp) protein (398aa)
arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=679935 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes finegoldii (strain DSM 17242 / JCM 16770 / AHN 2437 / CCUG; 46020 / CIP 107999).;"
Arginine--tRNA ligase n=1 Tax=Alistipes finegoldii CAG:68 RepID=R5V7G2_9BACT
L1_008_000M1_scaffold_563_2
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1343..2365
DNA (1023bp) protein (341aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
tRNA-dihydrouridine synthase n=1 Tax=Alistipes putredinis CAG:67 RepID=R7JGP3_9BACT
tRNA-U20-dihydrouridine synthase
L1_008_000M1_scaffold_563_3
Alistipes finegoldii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2510..2992)
DNA (483bp) protein (161aa)
Methylglyoxal synthase {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089917}; Short=MGS {ECO:0000256|HAMAP-Rule:MF_00549};; EC=4.2.3.3 {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089921};; TaxID=679935 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes finegoldii (strain DSM 17242 / JCM 16770 / AHN 2437 / CCUG; 46020 / CIP 107999).;"
methylglyoxal synthase n=1 Tax=Alistipes senegalensis RepID=UPI00031E58C0
methylglyoxal synthase
L1_008_000M1_scaffold_563_4
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3015..3425)
DNA (411bp) protein (137aa)
hypothetical protein n=1 Tax=Alistipes senegalensis RepID=UPI0002D26AB9
Uncharacterized protein {ECO:0000313|EMBL:CDD25576.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
hypothetical protein
L1_008_000M1_scaffold_563_5
unknown

Not on your lists

comp(3458..3868)
DNA (411bp) protein (137aa)

This feature has no annotations

L1_008_000M1_scaffold_563_6
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3880..4830)
DNA (951bp) protein (317aa)
Transporter small conductance mechanosensitive ion channel MscS family protein n=1 Tax=Alistipes putredinis CAG:67 RepID=R7JGP7_9BACT
Transporter small conductance mechanosensitive ion channel MscS family protein {ECO:0000313|EMBL:CDE63114.1}; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
small-conductance mechanosensitive channel
L1_008_000M1_scaffold_563_7
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4921..6141
DNA (1221bp) protein (407aa)
Phosphoserine phosphatase SerB n=2 Tax=Alistipes RepID=B0MSR4_9BACT
Phosphoserine phosphatase SerB {ECO:0000313|EMBL:CDE63115.1}; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
phosphoserine phosphatase SerB
L1_008_000M1_scaffold_563_8
Alistipes putredinis, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6159..6932
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MSR5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDS04467.1}; TaxID=445970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes putredinis DSM 17216.;"
hypothetical protein
L1_008_000M1_scaffold_563_9
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6907..7710
DNA (804bp) protein (268aa)
Uncharacterized protein n=1 Tax=Alistipes putredinis CAG:67 RepID=R7JJN0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CDE63117.1}; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
hypothetical protein
L1_008_000M1_scaffold_563_10
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7717..8709)
DNA (993bp) protein (331aa)
GTPase Obg n=2 Tax=Alistipes RepID=D4IPT9_9BACT
Obg family GTPase CgtA
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
L1_008_000M1_scaffold_563_11
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8911..9576)
DNA (666bp) protein (222aa)
ABC transporter ATPase n=1 Tax=Alistipes onderdonkii RepID=UPI00037AE91C
ABC-type (Unclassified) transport system ATPase component {ECO:0000313|EMBL:CDD24127.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
ABC transporter ATPase
L1_008_000M1_scaffold_563_12
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9563..9883)
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Alistipes sp. CAG:29 RepID=R6Y678_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CDD24126.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
hypothetical protein
L1_008_000M1_scaffold_563_13
Alistipes finegoldii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9951..11057)
DNA (1107bp) protein (369aa)
L-alanine dehydrogenase (EC:1.4.1.1)
Alanine dehydrogenase {ECO:0000256|PIRNR:PIRNR000183}; EC=1.4.1.1 {ECO:0000256|PIRNR:PIRNR000183};; TaxID=679935 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes finegoldii (strain DSM 17242 / JCM 16770 / AHN 2437 / CCUG; 46020 / CIP 107999).;"
Alanine dehydrogenase n=1 Tax=Alistipes finegoldii (strain DSM 17242 / JCM 16770 / AHN 2437 / CCUG 46020 / CIP 107999) RepID=I3YPY8_ALIFI
L1_008_000M1_scaffold_563_14
Alistipes putredinis, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(11148..13565)
DNA (2418bp) protein (806aa)
Outer membrane insertion signal domain protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MSQ2_9BACT
Outer membrane insertion signal domain protein {ECO:0000313|EMBL:EDS04474.1}; TaxID=445970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes putredinis DSM 17216.;"
hypothetical protein
L1_008_000M1_scaffold_563_15
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13805..16249
DNA (2445bp) protein (815aa)
TonB-dependent receptor n=1 Tax=Alistipes sp. CAG:29 RepID=R6XKI2_9BACT
TonB-dependent receptor {ECO:0000313|EMBL:CDD24123.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
hypothetical protein
L1_008_000M1_scaffold_563_16
Alistipes finegoldii CAG:68, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16523..17974)
DNA (1452bp) protein (484aa)
Aminoacyl-histidine dipeptidase n=1 Tax=Alistipes finegoldii CAG:68 RepID=R5V9W1_9BACT
Aminoacyl-histidine dipeptidase {ECO:0000313|EMBL:CCZ77467.1}; TaxID=1263035 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes finegoldii CAG:68.;"
aminoacyl-histidine dipeptidase
L1_008_000M1_scaffold_563_17
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18006..19106)
DNA (1101bp) protein (367aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0003811BD2
Uncharacterized protein {ECO:0000313|EMBL:EGK05045.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
hypothetical protein
L1_008_000M1_scaffold_563_18
Cyclobacterium marinum, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

19280..20470
DNA (1191bp) protein (397aa)
Uncharacterized protein n=1 Tax=Cyclobacterium marinum (strain ATCC 25205 / DSM 745) RepID=G0J2D3_CYCMS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEL25207.1}; Flags: Precursor;; TaxID=880070 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium marinum (strain ATCC 25205 / DSM 745) (Flectobacillus; marinus).;"
L1_008_000M1_scaffold_563_19
Alistipes putredinis, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20531..21016
DNA (486bp) protein (162aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; TaxID=445970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes putredinis DSM 17216.;"
2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=2 Tax=Alistipes RepID=B0MSU3_9BACT
L1_008_000M1_scaffold_563_20
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21185..21853)
DNA (669bp) protein (223aa)
hypothetical protein n=1 Tax=Alistipes sp. JC136 RepID=UPI0002884E83
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCZ96937.1}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
L1_008_000M1_scaffold_563_21
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21866..22414)
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Alistipes sp. CAG:29 RepID=R6XKH8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CDD24118.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
hypothetical protein
L1_008_000M1_scaffold_563_22
Alistipes finegoldii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22460..25390)
DNA (2931bp) protein (977aa)
excinuclease ABC subunit A n=1 Tax=Alistipes onderdonkii RepID=UPI000370767A
excinuclease ABC subunit A
UvrABC system protein A {ECO:0000256|SAAS:SAAS00088996}; TaxID=679935 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes finegoldii (strain DSM 17242 / JCM 16770 / AHN 2437 / CCUG; 46020 / CIP 107999).;"
L1_008_000M1_scaffold_563_23
Alistipes putredinis, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25461..26222)
DNA (762bp) protein (254aa)
Hydrolase, carbon-nitrogen family n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MXF9_9BACT
Hydrolase, carbon-nitrogen family {ECO:0000313|EMBL:EDS02283.1}; TaxID=445970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes putredinis DSM 17216.;"
amidohydrolase
L1_008_000M1_scaffold_563_24
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26441..27283
DNA (843bp) protein (281aa)
hypothetical protein n=1 Tax=Alistipes senegalensis RepID=UPI00031C1CC2
YitL family protein {ECO:0000313|EMBL:CDD24113.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
hypothetical protein
L1_008_000M1_scaffold_563_25
Alistipes finegoldii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27280..28041
DNA (762bp) protein (254aa)
Methyltransferase family protein n=2 Tax=Alistipes RepID=I3YPX6_ALIFI
methyltransferase family protein
Methyltransferase family protein {ECO:0000313|EMBL:AFL79044.1}; TaxID=679935 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes finegoldii (strain DSM 17242 / JCM 16770 / AHN 2437 / CCUG; 46020 / CIP 107999).;"
L1_008_000M1_scaffold_563_26
Celeribacter baekdonensis, Celeribacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28043..28546)
DNA (504bp) protein (168aa)
ADA regulatory protein n=1 Tax=Celeribacter baekdonensis B30 RepID=K2K1I5_9RHOB
ADA regulatory protein {ECO:0000313|EMBL:EKE71335.1}; TaxID=1208323 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Celeribacter.;" source="Celeribacter baekdonensis B30.;"
AraC family transcriptional regulator
L1_008_000M1_scaffold_563_27
Prevotella sp. P5-119, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

28668..29276
DNA (609bp) protein (203aa)
hypothetical protein n=1 Tax=Treponema primitia RepID=UPI0002555325
Contig67, whole genome shotgun sequence {ECO:0000313|EMBL:KIP61323.1}; TaxID=1602171 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella sp. P5-119.;"
hypothetical protein
L1_008_000M1_scaffold_563_28
Treponema primitia, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

29273..29986
DNA (714bp) protein (238aa)
hypothetical protein n=1 Tax=Treponema primitia RepID=UPI0002555324
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEF85609.1}; TaxID=545694 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema primitia (strain ATCC BAA-887 / DSM 12427 / ZAS-2).;"
L1_008_000M1_scaffold_563_29
Treponema primitia, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

29973..31682
DNA (1710bp) protein (570aa)
ATP dependent DNA ligase C family protein n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2EC3A
ATP dependent DNA ligase C family protein
ATP dependent DNA ligase C region family {ECO:0000313|EMBL:AEF86581.1}; TaxID=545694 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema primitia (strain ATCC BAA-887 / DSM 12427 / ZAS-2).;"
L1_008_000M1_scaffold_563_30
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

31831..32505
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI000368D370
Multiple antibiotic transporter
UPF0056 membrane protein {ECO:0000256|RuleBase:RU362048}; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
Displaying items 1-30 of 39 in total

View Taxonomy