ggKbase home page

L1_008_000M1_scaffold_672

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_672_1
Alistipes sp. CAG:268, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2..484)
DNA (483bp) protein (161aa)
TIGR02757 family protein n=1 Tax=Alistipes sp. CAG:268 RepID=R6VMW4_9BACT
TIGR02757 family protein {ECO:0000313|EMBL:CDC95584.1}; TaxID=1262693 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:268.;"
hypothetical protein
L1_008_000M1_scaffold_672_2
Alistipes finegoldii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(465..1118)
DNA (654bp) protein (218aa)
Lipoprotein-releasing system ATP-binding protein LolD {ECO:0000256|HAMAP-Rule:MF_01708}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01708};; TaxID=679935 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes finegoldii (strain DSM 17242 / JCM 16770 / AHN 2437 / CCUG; 46020 / CIP 107999).;"
ABC transporter n=1 Tax=Alistipes onderdonkii RepID=UPI00036FEDDE
antimicrobial peptide ABC transporter ATPase
L1_008_000M1_scaffold_672_3
Bacteroides intestinalis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1115..1915)
DNA (801bp) protein (267aa)
hypothetical protein n=1 Tax=Alistipes onderdonkii RepID=UPI0003678FCA
Uncharacterized protein {ECO:0000313|EMBL:EDV04260.1}; TaxID=471870 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides intestinalis DSM 17393.;"
hypothetical protein
L1_008_000M1_scaffold_672_4
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1918..2709)
DNA (792bp) protein (264aa)
Dihydropteroate synthase n=1 Tax=Alistipes putredinis CAG:67 RepID=R7JGY8_9BACT
Dihydropteroate synthase {ECO:0000313|EMBL:CDE63189.1}; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
dihydropteroate synthase
L1_008_000M1_scaffold_672_5
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2735..3325)
DNA (591bp) protein (197aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
Dephospho-CoA kinase n=1 Tax=Alistipes putredinis CAG:67 RepID=R7JH54_9BACT
dephospho-CoA kinase
L1_008_000M1_scaffold_672_6
Alistipes finegoldii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3325..3732)
DNA (408bp) protein (136aa)
Uncharacterized protein n=2 Tax=Alistipes RepID=I3YQ32_ALIFI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL79100.1}; TaxID=679935 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes finegoldii (strain DSM 17242 / JCM 16770 / AHN 2437 / CCUG; 46020 / CIP 107999).;"
L1_008_000M1_scaffold_672_7
Alistipes putredinis, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3806..6847)
DNA (3042bp) protein (1014aa)
Export membrane protein SecD n=3 Tax=root RepID=B0MT01_9BACT
Export membrane protein SecD {ECO:0000313|EMBL:EDS04366.1}; TaxID=445970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes putredinis DSM 17216.;"
SecD/SecF family protein-export membrane protein
L1_008_000M1_scaffold_672_8
Alistipes sp. HGB5, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7116..9035)
DNA (1920bp) protein (640aa)
Chaperone protein DnaK n=1 Tax=Alistipes sp. HGB5 RepID=E4M8N7_9BACT
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=908612 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes sp. HGB5.;"
chaperone protein DnaK
L1_008_000M1_scaffold_672_9
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9347..9589)
DNA (243bp) protein (81aa)
Uncharacterized protein n=2 Tax=Alistipes RepID=B0MSZ7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CDE63194.1}; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
hypothetical protein
L1_008_000M1_scaffold_672_10
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9686..11911)
DNA (2226bp) protein (742aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI00036B8845
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:CDD23997.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
phosphate/sulfate permease
L1_008_000M1_scaffold_672_11
Alistipes putredinis, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12225..13682)
DNA (1458bp) protein (486aa)
Uncharacterized protein n=4 Tax=root RepID=B0MSZ5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDS04360.1}; TaxID=445970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes putredinis DSM 17216.;"
hypothetical protein
L1_008_000M1_scaffold_672_12
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13714..14364)
DNA (651bp) protein (217aa)
Uncharacterized protein n=3 Tax=root RepID=B0MSZ4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CDE63196.1}; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
hypothetical protein
L1_008_000M1_scaffold_672_13
unknown

Not on your lists

comp(14645..14776)
DNA (132bp) protein (44aa)

This feature has no annotations

L1_008_000M1_scaffold_672_14
unknown

Not on your lists

comp(15189..15320)
DNA (132bp) protein (44aa)

This feature has no annotations

L1_008_000M1_scaffold_672_15
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15401..15982)
DNA (582bp) protein (194aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
Holliday junction ATP-dependent DNA helicase RuvA n=4 Tax=root RepID=B0MSZ0_9BACT
Holliday junction DNA helicase subunit RuvA
L1_008_000M1_scaffold_672_16
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16077..16667
DNA (591bp) protein (197aa)
membrane protein n=1 Tax=Alistipes onderdonkii RepID=UPI000378DAC1
Outer membrane protein {ECO:0000313|EMBL:CDD26174.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
outer membrane protein
L1_008_000M1_scaffold_672_17
Alistipes sp. HGB5, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16909..17706
DNA (798bp) protein (266aa)
TIGR00159 family protein n=3 Tax=Alistipes RepID=I3YQ22_ALIFI
hypothetical protein
TIGR00159 family protein {ECO:0000313|EMBL:EFR58742.1}; TaxID=908612 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes sp. HGB5.;"
L1_008_000M1_scaffold_672_18
unknown

Not on your lists

comp(17766..18257)
DNA (492bp) protein (164aa)

This feature has no annotations

L1_008_000M1_scaffold_672_19
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18353..18709)
DNA (357bp) protein (119aa)
Protein translocase SecG subunit n=1 Tax=Alistipes sp. CAG:29 RepID=R6Y9Y2_9BACT
Protein translocase SecG subunit {ECO:0000313|EMBL:CDD25451.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
protein translocase subunit SecG
L1_008_000M1_scaffold_672_20
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18721..19209)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Alistipes sp. CAG:29 RepID=R6XUV5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CDD25450.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
hypothetical protein
L1_008_000M1_scaffold_672_21
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19212..19745)
DNA (534bp) protein (178aa)
Uncharacterized protein n=2 Tax=Alistipes RepID=B0MU70_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CDE63204.1}; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
hypothetical protein
L1_008_000M1_scaffold_672_22
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19823..21016)
DNA (1194bp) protein (398aa)
Sigma-54 interaction domain protein n=1 Tax=Alistipes putredinis CAG:67 RepID=R7JH64_9BACT
Sigma-54 interaction domain protein {ECO:0000313|EMBL:CDE63205.1}; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
transcriptional regulator
L1_008_000M1_scaffold_672_23
Alistipes sp. CAG:268, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21331..22074)
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Alistipes sp. CAG:268 RepID=R6VBG9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CDC95618.1}; TaxID=1262693 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:268.;"
hypothetical protein
L1_008_000M1_scaffold_672_24
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22292..23686
DNA (1395bp) protein (465aa)
Diaminopimelate decarboxylase (EC:4.1.1.19)
Arginine decarboxylase {ECO:0000256|SAAS:SAAS00212226}; EC=4.1.1.19 {ECO:0000256|SAAS:SAAS00212226, ECO:0000313|EMBL:CBK62911.1};; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
decarboxylase n=1 Tax=Alistipes sp. JC136 RepID=UPI0002883D42
L1_008_000M1_scaffold_672_25
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23759..24796)
DNA (1038bp) protein (346aa)
penicillin amidase . Cysteine peptidase. MEROPS family C59 (EC:3.5.1.11 3.5.1.24)
Penicillin V acylase-like amidase n=1 Tax=Alistipes sp. CAG:29 RepID=R6XP32_9BACT
Penicillin V acylase-like amidase {ECO:0000313|EMBL:CDD25438.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
L1_008_000M1_scaffold_672_26
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25154..25564)
DNA (411bp) protein (137aa)
Cof n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0003816617
Uncharacterized protein {ECO:0000313|EMBL:CDE63216.1}; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
hypothetical protein
L1_008_000M1_scaffold_672_27
Alistipes putredinis, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25686..26285
DNA (600bp) protein (200aa)
Probable GTP-binding protein EngB n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MU69_9BACT
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321}; TaxID=445970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes putredinis DSM 17216.;"
ribosome biogenesis GTP-binding protein YsxC/EngB
L1_008_000M1_scaffold_672_28
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26356..27297
DNA (942bp) protein (314aa)
Ribose-phosphate diphosphokinase n=3 Tax=root RepID=B0MU68_9BACT
Ribose-phosphate pyrophosphokinase {ECO:0000313|EMBL:CDE63218.1}; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
ribose-phosphate pyrophosphokinase
L1_008_000M1_scaffold_672_29
Alistipes sp. CAG:268, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27683..28498)
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Alistipes sp. CAG:268 RepID=R6VFE6_9BACT
short-chain alcohol dehydrogenase
Uncharacterized protein {ECO:0000313|EMBL:CDC95850.1}; TaxID=1262693 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:268.;"
L1_008_000M1_scaffold_672_30
Alistipes finegoldii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28495..29283)
DNA (789bp) protein (263aa)
Metal-dependent hydrolase, beta-lactamase superfamily I n=1 Tax=Alistipes finegoldii (strain DSM 17242 / JCM 16770 / AHN 2437 / CCUG 46020 / CIP 107999) RepID=I3YQ04_ALIFI
beta-lactamase superfamily metal-dependent hydrolase
Metal-dependent hydrolase, beta-lactamase superfamily I {ECO:0000313|EMBL:AFL79072.1}; TaxID=679935 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes finegoldii (strain DSM 17242 / JCM 16770 / AHN 2437 / CCUG; 46020 / CIP 107999).;"
Displaying items 1-30 of 40 in total

View Taxonomy