ggKbase home page

L1_008_000M1_scaffold_704

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_704_1
Synergistes jonesii, Synergistes, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

2..922
DNA (921bp) protein (307aa)
type I site-specific deoxyribonuclease, HsdR family (EC:3.1.21.3)
Type I site-specific deoxyribonuclease, HsdR family n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4K6E8_9FIRM
DEAD/DEAH box helicase {ECO:0000313|EMBL:KEJ92018.1}; TaxID=2754 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Synergistes.;" source="Synergistes jonesii.;"
L1_008_000M1_scaffold_704_2
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1162..1530)
DNA (369bp) protein (123aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L9G4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL16259.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_008_000M1_scaffold_704_3
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1546..1725)
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6RVZ0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC38562.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
hypothetical protein
L1_008_000M1_scaffold_704_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2000..3211)
DNA (1212bp) protein (404aa)
carboxynorspermidine decarboxylase (EC:4.1.1.-)
Putative carboxynorspermidine decarboxylase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSD3_9FIRM
Putative carboxynorspermidine decarboxylase {ECO:0000313|EMBL:EFB74418.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_008_000M1_scaffold_704_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3211..4470)
DNA (1260bp) protein (420aa)
Saccharopine dehydrogenase {ECO:0000313|EMBL:EFB74417.1}; EC=1.5.1.7 {ECO:0000313|EMBL:EFB74417.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
carboxynorspermidine dehydrogenase (EC:1.5.1.7)
Saccharopine dehydrogenase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSD2_9FIRM
L1_008_000M1_scaffold_704_6
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4505..5362)
DNA (858bp) protein (286aa)
Agmatinase {ECO:0000313|EMBL:EDP21555.1}; EC=3.5.3.11 {ECO:0000313|EMBL:EDP21555.1};; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
agmatinase (EC:3.5.3.11)
Agmatinase n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SAH7_9FIRM
L1_008_000M1_scaffold_704_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5362..6219)
DNA (858bp) protein (286aa)
spermidine synthase (EC:2.5.1.16)
Spermidine synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSD0_9FIRM
Polyamine aminopropyltransferase {ECO:0000256|HAMAP-Rule:MF_00198}; Putrescine aminopropyltransferase {ECO:0000256|HAMAP-Rule:MF_00198}; Spermidine synthase {ECO:0000256|HAMAP-Rule:MF_00198}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_008_000M1_scaffold_704_8
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6232..7698)
DNA (1467bp) protein (489aa)
arginine decarboxylase (EC:4.1.1.19)
Arginine decarboxylase n=2 Tax=Faecalibacterium prausnitzii RepID=D4KBQ2_9FIRM
Orn/Lys/Arg decarboxylase, major domain protein {ECO:0000313|EMBL:EDP21553.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
L1_008_000M1_scaffold_704_9
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8144..8815)
DNA (672bp) protein (224aa)
Precorrin-8X methylmutase {ECO:0000313|EMBL:EFQ06614.1}; EC=5.4.1.2 {ECO:0000313|EMBL:EFQ06614.1};; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
precorrin-8X methylmutase (EC:5.4.1.2)
Precorrin-8X methylmutase n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZJL1_9FIRM
L1_008_000M1_scaffold_704_10
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8812..10323)
DNA (1512bp) protein (504aa)
adenosylcobyric acid synthase (glutamine-hydrolysing) (EC:6.3.5.10)
Cobyric acid synthase n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H998_9FIRM
Cobyric acid synthase {ECO:0000256|HAMAP-Rule:MF_00028, ECO:0000256|SAAS:SAAS00231811}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
L1_008_000M1_scaffold_704_11
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10320..11372)
DNA (1053bp) protein (351aa)
Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase (EC:4.1.1.81)
Putative threonine-phosphate decarboxylase n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H999_9FIRM
Putative threonine-phosphate decarboxylase {ECO:0000313|EMBL:EEU95636.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
L1_008_000M1_scaffold_704_12
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11386..12348)
DNA (963bp) protein (321aa)
adenosylcobinamide-phosphate synthase (EC:6.3.1.10)
Cobalamin biosynthesis protein CobD n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K375_9FIRM
Cobalamin biosynthesis protein CobD {ECO:0000256|HAMAP-Rule:MF_00024}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L1_008_000M1_scaffold_704_13
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12342..12941)
DNA (600bp) protein (200aa)
Fructose-2,6-bisphosphatase (EC:3.1.3.73 5.4.2.1)
Phosphoglycerate mutase family protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H9A1_9FIRM
Phosphoglycerate mutase family protein {ECO:0000313|EMBL:EEU95638.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
L1_008_000M1_scaffold_704_14
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12938..13255)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H9A2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU95639.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase
L1_008_000M1_scaffold_704_15
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13255..14007)
DNA (753bp) protein (251aa)
Adenosylcobinamide-GDP ribazoletransferase {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154501}; EC=2.7.8.26 {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154502};; Cobalamin synthase {ECO:0000256|HAMAP-Rule:MF_00719}; Cobalamin-5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00719}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
cobalamin-5'-phosphate synthase (EC:2.7.8.26)
Cobalamin synthase n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H9A3_9FIRM
L1_008_000M1_scaffold_704_16
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14004..14528)
DNA (525bp) protein (175aa)
Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase (EC:2.7.1.156 2.7.7.62)
Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase {ECO:0000313|EMBL:CBK97965.1}; EC=2.7.1.156 {ECO:0000313|EMBL:CBK97965.1};; EC=2.7.7.62 {ECO:0000313|EMBL:CBK97965.1};; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K372_9FIRM
L1_008_000M1_scaffold_704_17
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14522..15586)
DNA (1065bp) protein (355aa)
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase {ECO:0000256|SAAS:SAAS00013344}; EC=2.4.2.21 {ECO:0000256|SAAS:SAAS00013328};; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC:2.4.2.21)
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H9A5_9FIRM
L1_008_000M1_scaffold_704_18
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15583..16929)
DNA (1347bp) protein (449aa)
cobyrinic acid a,c-diamide synthase (EC:6.3.5.9)
Cobyrinic acid a c-diamide synthase n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6PXC5_9FIRM
Cobyrinic acid a c-diamide synthase {ECO:0000313|EMBL:CDC29033.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
L1_008_000M1_scaffold_704_19
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16931..18124)
DNA (1194bp) protein (398aa)
precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit/precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit (EC:1.-.-.- 2.1.1.132)
Precorrin-6y C5 15-methyltransferase (Decarboxylating) CbiE subunit/precorrin-6Y C5 15-methyltransferase (Decarboxylating) CbiT subunit n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6QDY1_9FIRM
Precorrin-6y C5 15-methyltransferase (Decarboxylating) CbiE subunit/precorrin-6Y C5 15-methyltransferase (Decarboxylating) CbiT subunit {ECO:0000313|EMBL:CDC29036.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
L1_008_000M1_scaffold_704_20
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18121..18855)
DNA (735bp) protein (245aa)
Precorrin-6A reductase {ECO:0000313|EMBL:EEU95457.1}; EC=1.3.1.54 {ECO:0000313|EMBL:EEU95457.1};; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
precorrin-6x reductase (EC:1.3.1.54)
Precorrin-6A reductase n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H9A8_9FIRM
L1_008_000M1_scaffold_704_21
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18852..19592)
DNA (741bp) protein (247aa)
precorrin-3 methyltransferase (EC:2.1.1.131)
Precorrin-3 methyltransferase n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6PZU1_9FIRM
Precorrin-3 methyltransferase {ECO:0000313|EMBL:CDC29040.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
L1_008_000M1_scaffold_704_22
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19594..20583)
DNA (990bp) protein (330aa)
Cobalamin biosynthesis protein CbiG n=2 Tax=Faecalibacterium prausnitzii RepID=D4K602_9FIRM
Cobalamin biosynthesis protein CbiG
CbiG {ECO:0000313|EMBL:EDP20072.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
L1_008_000M1_scaffold_704_23
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20580..21338)
DNA (759bp) protein (253aa)
Precorrin-4 C(11)-methyltransferase {ECO:0000313|EMBL:EFQ06628.1}; EC=2.1.1.133 {ECO:0000313|EMBL:EFQ06628.1};; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
precorrin-4 C11-methyltransferase (EC:2.1.1.133)
Precorrin-4 C(11)-methyltransferase n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZJM5_9FIRM
L1_008_000M1_scaffold_704_24
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21341..23245)
DNA (1905bp) protein (635aa)
Cobalamin biosynthesis protein CbiD n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K364_9FIRM
cobalamin biosynthesis protein CbiD
Cobalamin biosynthesis protein CbiD {ECO:0000313|EMBL:CBK97957.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L1_008_000M1_scaffold_704_25
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23242..24267)
DNA (1026bp) protein (342aa)
ABC-type Fe3+-siderophore transport system permease component n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6PXD7_9FIRM
ABC-type Fe3+-siderophore transport system permease component {ECO:0000313|EMBL:CDC29048.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
ABC-type Fe3+-siderophore transport system, permease component
L1_008_000M1_scaffold_704_26
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24275..25441)
DNA (1167bp) protein (389aa)
ABC-type Fe3+-hydroxamate transport system, periplasmic component n=2 Tax=Faecalibacterium prausnitzii RepID=D4K606_9FIRM
ABC-type Fe3+-hydroxamate transport system, periplasmic component
ABC-type Fe3+-hydroxamate transport system, periplasmic component {ECO:0000313|EMBL:CBL03015.1}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
L1_008_000M1_scaffold_704_27
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25438..26307)
DNA (870bp) protein (290aa)
Iron transport-associated domain protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H9B5_9FIRM
Iron transport-associated domain protein {ECO:0000313|EMBL:EEU95464.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
hypothetical protein
L1_008_000M1_scaffold_704_28
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26380..27654)
DNA (1275bp) protein (425aa)
Cobalamin biosynthesis protein CbiK, Co2+ chelatase (EC:4.99.1.3)
Cobalamin biosynthesis protein CbiK Co2+ chelatase n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6PZV0_9FIRM
Cobalamin biosynthesis protein CbiK Co2+ chelatase {ECO:0000313|EMBL:CDC29055.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
L1_008_000M1_scaffold_704_29
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

28315..29499
DNA (1185bp) protein (395aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6YQH3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD30831.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
oxidoreductase
L1_008_000M1_scaffold_704_30
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

29518..30348
DNA (831bp) protein (277aa)
Xylose isomerase domain protein TIM barrel n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6ZK48_9FIRM
Xylose isomerase domain protein TIM barrel {ECO:0000313|EMBL:CDD30832.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
xylose isomerase
Displaying items 1-30 of 38 in total

View Taxonomy