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L1_008_000M1_scaffold_805

Search features with annotation key words

Displaying items 1-30 of 63 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_805_1
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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311..1429
DNA (1119bp) protein (373aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FZW6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG91836.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
hypothetical protein
L1_008_000M1_scaffold_805_2
unknown

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1590..1883
DNA (294bp) protein (98aa)

This feature has no annotations

L1_008_000M1_scaffold_805_3
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2514..3734
DNA (1221bp) protein (407aa)
peptidase T (EC:3.4.11.4)
Peptidase T {ECO:0000256|SAAS:SAAS00064331}; EC=3.-.-.- {ECO:0000256|SAAS:SAAS00279025};; EC=3.4.11.- {ECO:0000256|SAAS:SAAS00275860};; EC=3.4.11.4 {ECO:0000256|SAAS:SAAS00064282};; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
Peptidase T n=3 Tax=Eubacterium RepID=D4JIF8_9FIRM
L1_008_000M1_scaffold_805_4
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3979..4887
DNA (909bp) protein (303aa)
Phosphate ABC transporter substrate-binding protein PhoT family (TC 3.A.1.7.1) n=1 Tax=Roseburia sp. CAG:182 RepID=R7QVT2_9FIRM
Phosphate ABC transporter substrate-binding protein PhoT family (TC 3.A.1.7.1) {ECO:0000313|EMBL:CDF42692.1}; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
phosphate ABC transporter substrate-binding protein, PhoT family (TC 3.A.1.7.1)
L1_008_000M1_scaffold_805_5
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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5010..5867
DNA (858bp) protein (286aa)
Phosphate ABC transporter permease PstC n=1 Tax=Roseburia sp. CAG:182 RepID=R7QYE3_9FIRM
Phosphate ABC transporter permease PstC {ECO:0000313|EMBL:CDF42693.1}; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
phosphate ABC transporter membrane protein 1, PhoT family (TC 3.A.1.7.1)
L1_008_000M1_scaffold_805_6
Eubacterium sp. CAG:38, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5867..6754
DNA (888bp) protein (296aa)
Phosphate ABC transporter n=1 Tax=Eubacterium sp. CAG:38 RepID=R7H8B6_9FIRM
Phosphate ABC transporter {ECO:0000313|EMBL:CDE35909.1}; TaxID=1262889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:38.;"
phosphate ABC transporter membrane protein 2, PhoT family (TC 3.A.1.7.1)
L1_008_000M1_scaffold_805_7
Eubacterium sp. CAG:156, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6764..7516
DNA (753bp) protein (251aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=1262880 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:156.;"
phosphate ABC transporter ATP-binding protein, PhoT family (TC 3.A.1.7.1) (EC:3.6.3.27)
Phosphate ABC transporter ATP-binding protein n=1 Tax=Eubacterium sp. CAG:156 RepID=R5YX67_9FIRM
L1_008_000M1_scaffold_805_8
Clostridium sp. CAG:411, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7516..8160
DNA (645bp) protein (215aa)
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Clostridium sp. CAG:411 RepID=R7I218_9CLOT
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=1262802 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:411.;"
phosphate uptake regulator, PhoU
L1_008_000M1_scaffold_805_9
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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8304..10082
DNA (1779bp) protein (593aa)
Na/Pi-cotransporter n=1 Tax=Roseburia sp. CAG:182 RepID=R7QVT6_9FIRM
Na/Pi-cotransporter {ECO:0000313|EMBL:CDF42697.1}; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
Na/Pi-cotransporter
L1_008_000M1_scaffold_805_10
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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10099..10770
DNA (672bp) protein (224aa)
Response regulator receiver domain protein n=1 Tax=Roseburia sp. CAG:182 RepID=R7QYE6_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:CDF42698.1}; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L1_008_000M1_scaffold_805_11
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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10780..12105
DNA (1326bp) protein (442aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
Signal transduction histidine kinase (EC:2.7.13.3)
Signal transduction histidine kinase n=1 Tax=Roseburia sp. CAG:182 RepID=R7QWU2_9FIRM
L1_008_000M1_scaffold_805_12
Roseburia sp. CAG:100, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12236..12886)
DNA (651bp) protein (217aa)
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E (EC:3.1.3.18)
Haloacid dehalogenase superfamily subfamily IA variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily subfamily IA variant 1 with third motif having Dx(3-4)D or Dx(3-4)E n=1 Tax=Roseburia sp. CAG:100 RepID=R7R6J1_9FIRM
Haloacid dehalogenase superfamily subfamily IA variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily subfamily IA variant 1 with third motif having Dx(3-4)D or Dx(3-4)E {ECO:0000313|EMBL:CDF46324.1}; TaxID=1262940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:100.;"
L1_008_000M1_scaffold_805_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12883..13530)
DNA (648bp) protein (216aa)
tRNA (guanine-N(7)-)-methyltransferase (EC:2.1.1.33)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
tRNA (guanine-N(7)-)-methyltransferase n=3 Tax=Roseburia intestinalis RepID=D4KTH8_9FIRM
L1_008_000M1_scaffold_805_14
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13710..15089
DNA (1380bp) protein (460aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HKC6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY30008.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
L1_008_000M1_scaffold_805_15
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15234..15752)
DNA (519bp) protein (173aa)
Putative uncharacterized protein n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T513_ROSHA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN98452.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L1_008_000M1_scaffold_805_16
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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15957..16598
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:45 RepID=R6NKU6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC11835.1}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
hypothetical protein
L1_008_000M1_scaffold_805_17
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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16589..17467
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:45 RepID=R6NI51_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC11833.1}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
hypothetical protein
L1_008_000M1_scaffold_805_18
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17472..18116)
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HZW3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY30011.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
Molybdopterin-guanine dinucleotide biosynthesis protein A
L1_008_000M1_scaffold_805_19
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18189..19661
DNA (1473bp) protein (491aa)
Arginine/lysine/ornithine decarboxylases (EC:4.1.1.18)
Orn/Lys/Arg decarboxylase, major domain protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FZX5_9FIRM
Orn/Lys/Arg decarboxylase, major domain protein {ECO:0000313|EMBL:EEG91845.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
L1_008_000M1_scaffold_805_20
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19721..20320
DNA (600bp) protein (200aa)
Guanylate kinase (EC:2.7.4.8)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HKD5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY30013.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
L1_008_000M1_scaffold_805_21
Eubacterium sp. 14-2, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20325..20765
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. 14-2 RepID=S0J697_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOT22581.1}; TaxID=1235790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 14-2.;"
hypothetical protein
L1_008_000M1_scaffold_805_22
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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20777..21766
DNA (990bp) protein (330aa)
DNA polymerase III, gamma/tau subunits (EC:2.7.7.7)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:182 RepID=R7QWP9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF41745.1}; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
L1_008_000M1_scaffold_805_23
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21768..22679
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:182 RepID=R7QW96_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF41746.1}; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
Uncharacterized homolog of PSP1
L1_008_000M1_scaffold_805_24
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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22663..23406
DNA (744bp) protein (248aa)
Methyltransferase domain protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2NUI1_9FIRM
Methyltransferase domain protein {ECO:0000313|EMBL:ERK41705.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
L1_008_000M1_scaffold_805_25
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23431..24267
DNA (837bp) protein (279aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FZY2_9FIRM
conserved hypothetical protein TIGR00096
L1_008_000M1_scaffold_805_26
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24304..25068
DNA (765bp) protein (255aa)
DeoR-family transcriptional regulator n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GNY8_EUBLK
DeoR-family transcriptional regulator
DeoR-family transcriptional regulator {ECO:0000313|EMBL:ADO37478.1}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
L1_008_000M1_scaffold_805_27
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25264..26748
DNA (1485bp) protein (495aa)
Uncharacterized protein n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GNQ3_EUBLK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO37296.1}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
L1_008_000M1_scaffold_805_28
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26785..29169
DNA (2385bp) protein (795aa)
Uncharacterized protein n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GNY5_EUBLK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO37475.1}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
L1_008_000M1_scaffold_805_29
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29191..30084
DNA (894bp) protein (298aa)
Putative pyruvate-formate lyase-activating enzyme n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GNY4_EUBLK
putative pyruvate-formate lyase-activating enzyme
Putative pyruvate-formate lyase-activating enzyme {ECO:0000313|EMBL:ADO37474.1}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
L1_008_000M1_scaffold_805_30
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30128..31909)
DNA (1782bp) protein (594aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HJQ7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY29965.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
hypothetical protein
Displaying items 1-30 of 63 in total

View Taxonomy