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L1_008_000M1_scaffold_913

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_913_1
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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2..157
DNA (156bp) protein (52aa)
DNA binding domain, excisionase family n=2 Tax=Firmicutes RepID=D4JA99_9FIRM
DNA binding domain, excisionase family
DNA binding domain, excisionase family {ECO:0000313|EMBL:EEC90648.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L1_008_000M1_scaffold_913_2
unknown

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279..398
DNA (120bp) protein (40aa)

This feature has no annotations

L1_008_000M1_scaffold_913_3
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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768..2018
DNA (1251bp) protein (417aa)
Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen (EC:3.6.1.-)
Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NLS4_9FIRM
Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen {ECO:0000313|EMBL:CCY98296.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
L1_008_000M1_scaffold_913_4
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2301..3293
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N8C2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY98084.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
McrBC 5-methylcytosine restriction system component
L1_008_000M1_scaffold_913_5
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3286..4488
DNA (1203bp) protein (401aa)
DnaB-like helicase C-terminal domain protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N281_9FIRM
DnaB-like helicase C-terminal domain protein {ECO:0000313|EMBL:CCY98085.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
primase/helicase
L1_008_000M1_scaffold_913_6
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4528..5622
DNA (1095bp) protein (365aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NL92_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY98086.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
L1_008_000M1_scaffold_913_7
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5740..6981
DNA (1242bp) protein (414aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NM61_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY98087.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
codB; cytosine permease
L1_008_000M1_scaffold_913_8
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7121..8167
DNA (1047bp) protein (349aa)
Diguanylate cyclase (GGDEF) domain n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N2V6_9FIRM
Diguanylate cyclase (GGDEF) domain {ECO:0000313|EMBL:CCY98088.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
diguanylate cyclase (GGDEF) domain
L1_008_000M1_scaffold_913_9
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8226..11048)
DNA (2823bp) protein (941aa)
Diguanylate cyclase (GGDEF) domain/uncharacterized domain HDIG n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N8C7_9FIRM
Diguanylate cyclase (GGDEF) domain/uncharacterized domain HDIG {ECO:0000313|EMBL:CCY98089.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
diguanylate cyclase (GGDEF) domain/uncharacterized domain HDIG
L1_008_000M1_scaffold_913_10
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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11412..12641
DNA (1230bp) protein (410aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NNW6_9FIRM
Signal transduction histidine kinase
L1_008_000M1_scaffold_913_11
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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12583..12996
DNA (414bp) protein (138aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N4Z0_9FIRM
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein {ECO:0000313|EMBL:CCY99050.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Signal transduction histidine kinase
L1_008_000M1_scaffold_913_12
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13216..13557
DNA (342bp) protein (114aa)
ArsC family protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NB17_9FIRM
ArsC family protein {ECO:0000313|EMBL:CCY99049.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Arsenate reductase and related proteins, glutaredoxin family
L1_008_000M1_scaffold_913_13
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13618..13839
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N5M8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY99048.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
hypothetical protein
L1_008_000M1_scaffold_913_14
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13950..14480
DNA (531bp) protein (177aa)
Uncharacterized ACR protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NQ45_9FIRM
Uncharacterized ACR protein {ECO:0000313|EMBL:CCY99047.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
hypothetical protein
L1_008_000M1_scaffold_913_15
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14484..14696
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NNW3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY99046.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
hypothetical protein
L1_008_000M1_scaffold_913_16
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14869..15324
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N4Y6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY99045.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Predicted branched-chain amino acid permease (azaleucine resistance)
L1_008_000M1_scaffold_913_17
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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15647..15979
DNA (333bp) protein (111aa)
Predicted branched-chain amino acid permeases (Azaleucine resistance) n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NB14_9FIRM
Predicted branched-chain amino acid permeases (Azaleucine resistance) {ECO:0000313|EMBL:CCY99044.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Predicted branched-chain amino acid permeases (azaleucine resistance)
L1_008_000M1_scaffold_913_18
unknown

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16027..16137
DNA (111bp) protein (37aa)

This feature has no annotations

L1_008_000M1_scaffold_913_19
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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16635..18152
DNA (1518bp) protein (506aa)
methylmalonate-semialdehyde dehydrogenase [acylating] (EC:1.2.1.27)
Methylmalonate-semialdehyde dehydrogenase [acylating] n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N570_9FIRM
Methylmalonate-semialdehyde dehydrogenase [acylating] {ECO:0000313|EMBL:CCY97039.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
L1_008_000M1_scaffold_913_20
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18446..19210)
DNA (765bp) protein (255aa)
Transcriptional regulators of sugar metabolism n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5MZ86_9FIRM
Transcriptional regulators of sugar metabolism {ECO:0000313|EMBL:CCY97040.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Transcriptional regulators of sugar metabolism
L1_008_000M1_scaffold_913_21
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19297..20937)
DNA (1641bp) protein (547aa)
Hydroxylamine reductase {ECO:0000256|HAMAP-Rule:MF_00069, ECO:0000256|SAAS:SAAS00038686}; EC=1.7.99.1 {ECO:0000256|HAMAP-Rule:MF_00069, ECO:0000256|SAAS:SAAS00150119};; Hybrid-cluster protein {ECO:0000256|HAMAP-Rule:MF_00069}; Prismane protein {ECO:0000256|HAMAP-Rule:MF_00069}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Hydroxylamine reductase n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NIB0_9FIRM
hypothetical protein
L1_008_000M1_scaffold_913_22
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21422..21835
DNA (414bp) protein (138aa)
Fe2+/Zn2+ uptake regulation proteins n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NIX2_9FIRM
Fe2+/Zn2+ uptake regulation proteins {ECO:0000313|EMBL:CCY97042.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Fe2+/Zn2+ uptake regulation proteins
L1_008_000M1_scaffold_913_23
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21832..22830
DNA (999bp) protein (333aa)
ABC-type metal ion transport system periplasmic component/surface adhesin n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N029_9FIRM
ABC-type metal ion transport system periplasmic component/surface adhesin {ECO:0000313|EMBL:CCY97043.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
ABC-type metal ion transport system, periplasmic component/surface adhesin
L1_008_000M1_scaffold_913_24
Blautia sp. KLE 1732, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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22799..23521
DNA (723bp) protein (241aa)
ABC-type Mn/Zn transport systems, ATPase component (EC:3.6.3.-)
ABC-type Mn/Zn transport systems, ATPase component n=3 Tax=Clostridiales RepID=D4LL73_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ERI97432.1}; TaxID=1226324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia sp. KLE 1732.;"
L1_008_000M1_scaffold_913_25
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23518..24315
DNA (798bp) protein (266aa)
ABC-type Mn2+/Zn2+ transport systems permease components n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NJS0_9FIRM
ABC-type Mn2+/Zn2+ transport systems permease components {ECO:0000313|EMBL:CCY97357.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
ABC-type Mn2+/Zn2+ transport systems, permease components
L1_008_000M1_scaffold_913_26
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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24414..25886
DNA (1473bp) protein (491aa)
Trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NJ41_9FIRM
Trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain {ECO:0000313|EMBL:CCY97356.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
L1_008_000M1_scaffold_913_27
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26739..27275
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N612_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY97354.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
L1_008_000M1_scaffold_913_28
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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27792..28832
DNA (1041bp) protein (347aa)
Na+/H+ antiporter family protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N0W3_9FIRM
Na+/H+ antiporter family protein {ECO:0000313|EMBL:CCY97353.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Na+/H+ antiporter family protein
L1_008_000M1_scaffold_913_29
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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28845..30461
DNA (1617bp) protein (539aa)
Amidohydrolase family protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NJR4_9FIRM
Amidohydrolase family protein {ECO:0000313|EMBL:CCY97352.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
TIM-barrel fold metal-dependent hydrolase
L1_008_000M1_scaffold_913_30
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30530..32011
DNA (1482bp) protein (494aa)
Betaine-aldehyde dehydrogenase n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NJ34_9FIRM
Betaine-aldehyde dehydrogenase {ECO:0000313|EMBL:CCY97351.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
aldehyde dehydrogenase
Displaying items 1-30 of 46 in total

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