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L1_008_000M1_scaffold_955

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_955_1
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

235..531
-----------------
DNA (297bp)
protein (99aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6PA39_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC06762.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
L1_008_000M1_scaffold_955_2
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

770..1516
-----------------
DNA (747bp)
protein (249aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6N409_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC06763.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
L1_008_000M1_scaffold_955_3
Clostridium sp. CAG:356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1900..2166
-----------------
DNA (267bp)
protein (89aa)
Phosphoglycerate mutase n=1 Tax=Clostridium sp. CAG:356 RepID=R6YNS8_9CLOT
Phosphoglycerate mutase {ECO:0000313|EMBL:CDD37628.1}; TaxID=1262800 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:356.;"
fructose-2,6-bisphosphatase
L1_008_000M1_scaffold_955_4
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2379..3284
-----------------
DNA (906bp)
protein (302aa)
Signal recognition particle receptor FtsY n=1 Tax=Clostridium sp. CAG:343 RepID=R6NEF4_9CLOT
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
signal recognition particle-docking protein ftsy
L1_008_000M1_scaffold_955_5
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3319..6105
-----------------
DNA (2787bp)
protein (929aa)
UPF0182 protein Csac_0864 n=1 Tax=Clostridium sp. CAG:343 RepID=R6N6P0_9CLOT
UPF0182 protein Csac_0864 {ECO:0000313|EMBL:CDC06765.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
hypothetical protein
L1_008_000M1_scaffold_955_6
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6201..7433)
-----------------
DNA (1233bp)
protein (411aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
tyrS1; tyrosine--tRNA ligase 1 (EC:6.1.1.1)
Tyrosine--tRNA ligase n=1 Tax=Clostridium sp. CAG:343 RepID=R6NKK6_9CLOT
L1_008_000M1_scaffold_955_7
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7437..7709)
-----------------
DNA (273bp)
protein (91aa)
Flagellar operon protein YvyF n=1 Tax=Clostridium sp. CAG:343 RepID=R6PA45_9CLOT
Flagellar operon protein YvyF {ECO:0000313|EMBL:CDC06767.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
L1_008_000M1_scaffold_955_8
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7796..8212)
-----------------
DNA (417bp)
protein (139aa)
Thioesterase superfamily protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6N414_9CLOT
Thioesterase superfamily protein {ECO:0000313|EMBL:CDC06768.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
thioesterase superfamily protein
L1_008_000M1_scaffold_955_9
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8355..8666
-----------------
DNA (312bp)
protein (104aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6NEF8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC06769.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
L1_008_000M1_scaffold_955_10
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8779..10221
-----------------
DNA (1443bp)
protein (481aa)
alpha-amylase (EC:3.2.1.1)
Carbohydrate-active enzyme n=1 Tax=Clostridium sp. CAG:343 RepID=R6N6P4_9CLOT
Carbohydrate-active enzyme {ECO:0000313|EMBL:CDC06770.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
L1_008_000M1_scaffold_955_11
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10264..12378
-----------------
DNA (2115bp)
protein (705aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
DNA-directed DNA polymerase III PolC n=1 Tax=Clostridium sp. CAG:343 RepID=R6NKL2_9CLOT
DNA-directed DNA polymerase III PolC
L1_008_000M1_scaffold_955_12
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12395..12835
-----------------
DNA (441bp)
protein (147aa)
dnaE; DNA polymerase III DnaE (EC:2.7.7.7)
DNA polymerase III alpha subunit n=1 Tax=Clostridium sp. CAG:343 RepID=R6PA50_9CLOT
DNA polymerase III alpha subunit {ECO:0000313|EMBL:CDC06772.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
L1_008_000M1_scaffold_955_13
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12792..13817
-----------------
DNA (1026bp)
protein (342aa)
DNA-directed DNA polymerase III PolC n=1 Tax=Clostridium sp. CAG:343 RepID=R6N416_9CLOT
DNA-directed DNA polymerase III PolC {ECO:0000313|EMBL:CDC06773.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
DNA-directed DNA polymerase III PolC
L1_008_000M1_scaffold_955_14
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13860..16151)
-----------------
DNA (2292bp)
protein (764aa)
magnesium-translocating P-type ATPase (EC:3.6.3.2)
Magnesium-translocating P-type ATPase n=1 Tax=Clostridium sp. CAG:343 RepID=R6NEG3_9CLOT
Magnesium-translocating P-type ATPase {ECO:0000313|EMBL:CDC06774.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
L1_008_000M1_scaffold_955_15
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16189..16476)
-----------------
DNA (288bp)
protein (96aa)
magnesium-translocating p-type ATPase (EC:3.6.3.2)
Magnesium-translocating P-type ATPase n=1 Tax=Clostridium sp. CAG:343 RepID=R6N6Q0_9CLOT
Magnesium-translocating P-type ATPase {ECO:0000313|EMBL:CDC06775.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
L1_008_000M1_scaffold_955_16
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16634..18736)
-----------------
DNA (2103bp)
protein (701aa)
Ferrous iron transport protein B n=1 Tax=Clostridium sp. CAG:343 RepID=R6NKL6_9CLOT
Ferrous iron transport protein B {ECO:0000313|EMBL:CDC06776.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
HSR1-like GTP-binding protein
L1_008_000M1_scaffold_955_17
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18902..19135)
-----------------
DNA (234bp)
protein (78aa)
FeoA family protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6PA57_9CLOT
FeoA family protein {ECO:0000313|EMBL:CDC06777.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
FeoA family protein
L1_008_000M1_scaffold_955_18
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19263..19724
-----------------
DNA (462bp)
protein (154aa)
dut; deoxyuridine 5`-triphosphate nucleotidohydrolase (EC:3.6.1.23)
DUTP diphosphatase n=1 Tax=Clostridium sp. CAG:343 RepID=R6N421_9CLOT
DUTP diphosphatase {ECO:0000313|EMBL:CDC06778.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
L1_008_000M1_scaffold_955_19
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19943..20506
-----------------
DNA (564bp)
protein (188aa)
Transcriptional regulator CarD family n=1 Tax=Clostridium sp. CAG:343 RepID=R6NEG7_9CLOT
Transcriptional regulator CarD family {ECO:0000313|EMBL:CDC06779.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
BadM/Rrf2 family transcriptional regulator
L1_008_000M1_scaffold_955_20
Clostridium sp. CAG:269, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20853..22091)
-----------------
DNA (1239bp)
protein (413aa)
Integrase family protein n=1 Tax=Clostridium sp. CAG:269 RepID=R7IV26_9CLOT
Integrase family protein {ECO:0000313|EMBL:CDE54497.1}; TaxID=1262788 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:269.;"
integrase
L1_008_000M1_scaffold_955_21
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22125..22325)
-----------------
DNA (201bp)
protein (67aa)
DNA binding domain excisionase family n=1 Tax=Clostridium sp. CAG:343 RepID=R6N7Z7_9CLOT
DNA binding domain excisionase family {ECO:0000313|EMBL:CDC07245.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
DNA binding domain, excisionase family
L1_008_000M1_scaffold_955_22
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22694..23797
-----------------
DNA (1104bp)
protein (368aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6PBH4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC07247.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
hypothetical protein
L1_008_000M1_scaffold_955_23
Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

23816..24574
-----------------
DNA (759bp)
protein (253aa)
SMC domain protein n=1 Tax=Caldicellulosiruptor lactoaceticus 6A RepID=G2PVD9_9FIRM
SMC domain-containing protein
SMC domain protein {ECO:0000313|EMBL:ADQ41112.1}; TaxID=632335 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor kristjanssonii (strain ATCC 700853 / DSM 12137 /; I77R1B).;"
L1_008_000M1_scaffold_955_24
Bacillus methanolicus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

24670..25923
-----------------
DNA (1254bp)
protein (418aa)
SMC protein-like protein n=1 Tax=Bacillus methanolicus PB1 RepID=I3E5L4_BACMT
SMC protein-like protein {ECO:0000313|EMBL:EIJ81785.1}; TaxID=997296 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus methanolicus PB1.;"
SMC protein-like protein
L1_008_000M1_scaffold_955_25
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25886..27256
-----------------
DNA (1371bp)
protein (457aa)
Putative transcriptional regulator n=1 Tax=Clostridium sp. CAG:343 RepID=R6NFR3_9CLOT
Putative transcriptional regulator {ECO:0000313|EMBL:CDC07249.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
transcriptional regulator
L1_008_000M1_scaffold_955_26
unknown

Not on your lists

27302..28180
-----------------
DNA (879bp)
protein (293aa)

This feature has no annotations

L1_008_000M1_scaffold_955_27
Clostridium sp. CAG:269, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28186..28578
-----------------
DNA (393bp)
protein (131aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:269 RepID=R7IW62_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE55864.1}; TaxID=1262788 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:269.;"
L1_008_000M1_scaffold_955_28
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28602..29786)
-----------------
DNA (1185bp)
protein (395aa)
Mobilization protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6PBH9_9CLOT
Mobilization protein {ECO:0000313|EMBL:CDC07252.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
pre; Plasmid recombination enzyme
L1_008_000M1_scaffold_955_29
Clostridium sp. CAG:269, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30086..30640)
-----------------
DNA (555bp)
protein (185aa)
Replication initiator A domain protein n=1 Tax=Clostridium sp. CAG:269 RepID=R7J020_9CLOT
Replication initiator A domain protein {ECO:0000313|EMBL:CDE56202.1}; TaxID=1262788 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:269.;"
replication initiator A domain-containing protein
L1_008_000M1_scaffold_955_30
Firmicutes bacterium CAG:102, Firmicutes, Bacteria

Not on your lists

comp(31162..32334)
-----------------
DNA (1173bp)
protein (391aa)
Site-specific recombinase XerD n=1 Tax=Firmicutes bacterium CAG:102 RepID=R5A8X7_9FIRM
Site-specific recombinase XerD {ECO:0000313|EMBL:CCX39675.1}; TaxID=1262998 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:102.;"
integrase
Displaying items 1-30 of 53 in total

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