ggKbase home page

L1_008_000M1_scaffold_988

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_988_1
Blautia sp. KLE 1732, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..739
DNA (738bp) protein (246aa)
Glycerophosphoryl diester phosphodiesterase (EC:3.1.4.46)
Glycerophosphoryl diester phosphodiesterase n=3 Tax=Clostridiales RepID=R5NH39_9FIRM
Putative glycerophosphodiester phosphodiesterase {ECO:0000313|EMBL:ERI90404.1}; TaxID=1226324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia sp. KLE 1732.;"
L1_008_000M1_scaffold_988_2
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1089..1934
DNA (846bp) protein (282aa)
malate dehydrogenase (NAD) (EC:1.1.1.37)
Malate dehydrogenase (NAD) n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5MY27_9FIRM
Malate dehydrogenase (NAD) {ECO:0000313|EMBL:CCY96650.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
L1_008_000M1_scaffold_988_3
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2107..2682
DNA (576bp) protein (192aa)
Glycerol-3-phosphate responsive antiterminator (MRNA-binding) n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N409_9FIRM
Glycerol-3-phosphate responsive antiterminator (MRNA-binding) {ECO:0000313|EMBL:CCY96649.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Glycerol-3-phosphate responsive antiterminator (mRNA-binding)
L1_008_000M1_scaffold_988_4
Ruminococcus sp. SR1/5, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2734..4233
DNA (1500bp) protein (500aa)
glycerol kinase (EC:2.7.1.30)
Glycerol kinase {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376}; EC=2.7.1.30 {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376};; ATP:glycerol 3-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00186}; Glycerokinase {ECO:0000256|HAMAP-Rule:MF_00186}; TaxID=657323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. SR1/5.;"
Glycerol kinase n=1 Tax=Ruminococcus sp. SR1/5 RepID=D4LP59_9FIRM
L1_008_000M1_scaffold_988_5
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4364..4774)
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NHS0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY96647.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
hypothetical protein
L1_008_000M1_scaffold_988_6
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4872..5966
DNA (1095bp) protein (365aa)
DNA polymerase III, delta subunit (EC:2.7.7.7)
DNA polymerase III delta subunit n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NH36_9FIRM
DNA polymerase III delta subunit {ECO:0000313|EMBL:CCY96646.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
L1_008_000M1_scaffold_988_7
Ruminococcus sp. CAG:90, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5976..6548)
DNA (573bp) protein (191aa)
Predicted metal-dependent hydrolase n=1 Tax=Ruminococcus sp. CAG:90 RepID=R7GRY3_9FIRM
Predicted metal-dependent hydrolase {ECO:0000313|EMBL:CDE29508.1}; TaxID=1262968 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:90.;"
Predicted metal-dependent hydrolase
L1_008_000M1_scaffold_988_8
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6813..7985
DNA (1173bp) protein (391aa)
Germination protease {ECO:0000256|HAMAP-Rule:MF_00626}; EC=3.4.24.78 {ECO:0000256|HAMAP-Rule:MF_00626};; GPR endopeptidase {ECO:0000256|HAMAP-Rule:MF_00626}; Germination proteinase {ECO:0000256|HAMAP-Rule:MF_00626}; Spore protease {ECO:0000256|HAMAP-Rule:MF_00626}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Germination protease. (EC:3.4.24.78)
Germination protease n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5MYV8_9FIRM
L1_008_000M1_scaffold_988_9
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8035..9339
DNA (1305bp) protein (435aa)
Stage II sporulation protein P (SpoIIP) n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NHR4_9FIRM
Stage II sporulation protein P (SpoIIP) {ECO:0000313|EMBL:CCY96642.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Stage II sporulation protein P (SpoIIP).
L1_008_000M1_scaffold_988_10
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9479..11287
DNA (1809bp) protein (603aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Elongation factor 4 n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NH30_9FIRM
GTP-binding protein LepA
L1_008_000M1_scaffold_988_11
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11299..11787
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5MY17_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY96640.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
hypothetical protein
L1_008_000M1_scaffold_988_12
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11777..12913
DNA (1137bp) protein (379aa)
putative oxygen-independent coproporphyrinogen III oxidase (EC:1.3.99.22)
Putative oxygen-independent coproporphyrinogen III oxidase n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N400_9FIRM
Putative oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:CCY96639.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
L1_008_000M1_scaffold_988_13
Blautia sp. KLE 1732, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13071..15920
DNA (2850bp) protein (950aa)
UvrABC system protein A n=2 Tax=Clostridiales RepID=U2CIT1_9FIRM
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=1226324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia sp. KLE 1732.;"
excinuclease ABC, A subunit
L1_008_000M1_scaffold_988_14
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16082..17065
DNA (984bp) protein (328aa)
Rod shape-determining protein MreB n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NHR0_9FIRM
Rod shape-determining protein MreB {ECO:0000313|EMBL:CCY96637.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
rod shape-determining protein MreB
L1_008_000M1_scaffold_988_15
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17201..19444
DNA (2244bp) protein (748aa)
ATP-dependent RecD-like DNA helicase {ECO:0000256|HAMAP-Rule:MF_01488}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01488};; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
helicase, putative, RecD/TraA family (EC:3.1.11.5)
Helicase putative RecD/TraA family n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NH26_9FIRM
L1_008_000M1_scaffold_988_16
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19518..20225
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5MY12_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY96635.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Predicted amidophosphoribosyltransferases
L1_008_000M1_scaffold_988_17
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20369..20803
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N3Z7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY96634.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
hypothetical protein
L1_008_000M1_scaffold_988_18
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20800..21903
DNA (1104bp) protein (368aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5MYV2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY96633.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
hypothetical protein
L1_008_000M1_scaffold_988_19
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22031..22915
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NHQ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY96632.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
conserved hypothetical protein TIGR00159
L1_008_000M1_scaffold_988_20
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22896..24200
DNA (1305bp) protein (435aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NH20_9FIRM
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CCY96631.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
hypothetical protein
L1_008_000M1_scaffold_988_21
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24235..24498
DNA (264bp) protein (88aa)
Phosphotransferase System HPr (HPr) Family n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5MY08_9FIRM
Phosphotransferase System HPr (HPr) Family {ECO:0000313|EMBL:CCY96630.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Phosphotransferase System HPr (HPr) Family
L1_008_000M1_scaffold_988_22
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24554..27346
DNA (2793bp) protein (931aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N3Z4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY96629.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
hypothetical protein
L1_008_000M1_scaffold_988_23
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27503..29059
DNA (1557bp) protein (519aa)
Putative cell wall binding repeat n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5MYU8_9FIRM
Putative cell wall binding repeat {ECO:0000313|EMBL:CCY96628.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Putative cell wall binding repeat.
L1_008_000M1_scaffold_988_24
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29142..29480)
DNA (339bp) protein (113aa)
EamA-like transporter family n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NHP8_9FIRM
EamA-like transporter family {ECO:0000313|EMBL:CCY96627.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
EamA-like transporter family.
L1_008_000M1_scaffold_988_25
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29473..29823)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NH17_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY96626.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
EamA-like transporter family.
L1_008_000M1_scaffold_988_26
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29999..30931
DNA (933bp) protein (311aa)
Glycosyltransferases involved in cell wall biogenesis (EC:2.7.8.- 2.4.1.83)
Glycosyltransferases involved in cell wall biogenesis n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5MY04_9FIRM
Glycosyltransferases involved in cell wall biogenesis {ECO:0000313|EMBL:CCY96625.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
L1_008_000M1_scaffold_988_27
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30931..31902
DNA (972bp) protein (324aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N3Y9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY96624.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
hypothetical protein
L1_008_000M1_scaffold_988_28
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31899..33191
DNA (1293bp) protein (431aa)
Carbamoylphosphate synthase large subunit (Split gene in MJ) n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5MYU7_9FIRM
Carbamoylphosphate synthase large subunit (Split gene in MJ) {ECO:0000313|EMBL:CCY96623.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Carbamoylphosphate synthase large subunit (split gene in MJ)
L1_008_000M1_scaffold_988_29
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33280..34410
DNA (1131bp) protein (377aa)
TDP-4-keto-6-deoxy-D-glucose transaminase n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NHP2_9FIRM
TDP-4-keto-6-deoxy-D-glucose transaminase {ECO:0000313|EMBL:CCY96622.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
TDP-4-keto-6-deoxy-D-glucose transaminase
L1_008_000M1_scaffold_988_30
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34429..35739
DNA (1311bp) protein (437aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NH13_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY96621.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
D-alanyl-D-alanine carboxypeptidase
Displaying items 1-30 of 51 in total

View Taxonomy