ggKbase home page

L1_008_000M1_scaffold_996

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_996_1
Coprococcus sp. CAG:782, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..624)
DNA (624bp) protein (208aa)
Sigma-70 region 2 n=1 Tax=Clostridium sp. CAG:127 RepID=R5NUN0_9CLOT
Sigma-70 region 2 {ECO:0000313|EMBL:CCY53699.1}; TaxID=1262863 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus sp. CAG:782.;"
sig2; RNA polymerase sigma factor
L1_008_000M1_scaffold_996_2
unknown

Not on your lists

comp(600..710)
DNA (111bp) protein (37aa)

This feature has no annotations

L1_008_000M1_scaffold_996_3
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1280..1930)
DNA (651bp) protein (217aa)
Predicted phosphatases (EC:3.1.3.18)
Predicted phosphatases {ECO:0000313|EMBL:CBL16260.1}; EC=3.1.3.18 {ECO:0000313|EMBL:CBL16260.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Predicted phosphatases n=2 Tax=Ruminococcus RepID=D4L9G5_9FIRM
L1_008_000M1_scaffold_996_4
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2237..3850
DNA (1614bp) protein (538aa)
O-Antigen ligase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E6K4_9FIRM
O-Antigen ligase {ECO:0000313|EMBL:CCX83771.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
O-Antigen ligase.
L1_008_000M1_scaffold_996_5
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3854..4717)
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DXW3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83769.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
polysaccharide deacetylase
L1_008_000M1_scaffold_996_6
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4876..5268
DNA (393bp) protein (131aa)
Fe2+/Zn2+ uptake regulation proteins n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L9G7_9FIRM
Fe2+/Zn2+ uptake regulation proteins
Fe2+/Zn2+ uptake regulation proteins {ECO:0000313|EMBL:CBL16262.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_008_000M1_scaffold_996_7
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5294..5833
DNA (540bp) protein (180aa)
Rubrerythrin n=2 Tax=Ruminococcus RepID=D4L9G8_9FIRM
Rubrerythrin
Rubrerythrin {ECO:0000313|EMBL:CCX83764.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_008_000M1_scaffold_996_8
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5932..6090
DNA (159bp) protein (53aa)
Rubredoxin n=2 Tax=Ruminococcus RepID=D4L9G9_9FIRM
Rubredoxin
Rubredoxin {ECO:0000256|PIRNR:PIRNR000071, ECO:0000313|EMBL:CBL16264.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_008_000M1_scaffold_996_9
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6155..6913
DNA (759bp) protein (253aa)
exodeoxyribonuclease III (EC:3.1.11.2)
Exodeoxyribonuclease III n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E6I2_9FIRM
Exodeoxyribonuclease III {ECO:0000313|EMBL:CCX83751.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_008_000M1_scaffold_996_10
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7054..7995)
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DP26_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX81963.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_008_000M1_scaffold_996_11
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8145..9260)
DNA (1116bp) protein (372aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L9H1_9FIRM
Protein of unknown function (DUF2974).
Uncharacterized protein {ECO:0000313|EMBL:CBL16266.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_008_000M1_scaffold_996_12
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9390..11216)
DNA (1827bp) protein (609aa)
ATP-dependent DNA helicase, RecQ-like (EC:3.6.1.-)
ATP-dependent DNA helicase RecQ-like n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DUB3_9FIRM
ATP-dependent DNA helicase RecQ-like {ECO:0000313|EMBL:CCX83748.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_008_000M1_scaffold_996_13
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11213..11587)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E4P6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83747.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_008_000M1_scaffold_996_14
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11747..12133)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DU33_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83745.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_008_000M1_scaffold_996_15
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12181..13275)
DNA (1095bp) protein (365aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DUA8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83743.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_008_000M1_scaffold_996_16
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13288..14832)
DNA (1545bp) protein (515aa)
Dockerin type I repeat n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E6H1_9FIRM
Dockerin type I repeat {ECO:0000313|EMBL:CCX83741.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Dockerin type I repeat.
L1_008_000M1_scaffold_996_17
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14846..15430)
DNA (585bp) protein (195aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L9H6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL16271.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_008_000M1_scaffold_996_18
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15447..15833)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DUA3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83738.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein predicted by Glimmer/Critica
L1_008_000M1_scaffold_996_19
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16025..16426)
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E6G7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83736.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_008_000M1_scaffold_996_20
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16612..17250)
DNA (639bp) protein (213aa)
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L9H8_9FIRM
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain {ECO:0000313|EMBL:CBL16273.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_008_000M1_scaffold_996_21
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17228..18535)
DNA (1308bp) protein (436aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L9H9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL16274.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_008_000M1_scaffold_996_22
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18532..20199)
DNA (1668bp) protein (556aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DU92_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83728.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_008_000M1_scaffold_996_23
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20681..20980
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MAF9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS68054.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
hypothetical protein
L1_008_000M1_scaffold_996_24
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21887..22753)
DNA (867bp) protein (289aa)
Putative cell wall binding repeat-containing domain protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DWB5_9FIRM
Putative cell wall binding repeat-containing domain protein {ECO:0000313|EMBL:CCX83214.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_008_000M1_scaffold_996_25
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22808..23818)
DNA (1011bp) protein (337aa)
Ig-like domain-containing surface protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DSQ1_9FIRM
Ig-like domain-containing surface protein {ECO:0000313|EMBL:CCX83213.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_008_000M1_scaffold_996_26
unknown

Not on your lists

comp(23913..24392)
DNA (480bp) protein (160aa)

This feature has no annotations

L1_008_000M1_scaffold_996_27
unknown

Not on your lists

comp(25378..26406)
DNA (1029bp) protein (343aa)

This feature has no annotations

L1_008_000M1_scaffold_996_28
unknown

Not on your lists

comp(26426..27268)
DNA (843bp) protein (281aa)

This feature has no annotations

L1_008_000M1_scaffold_996_29
Streptococcus agalactiae, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(27365..28867)
DNA (1503bp) protein (501aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1311 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus agalactiae.;"
UvrD-like helicase n=1 Tax=Clostridium sp. MSTE9 RepID=J0WUK5_9CLOT
hypothetical protein
L1_008_000M1_scaffold_996_30
Streptococcus agalactiae, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(28864..30543)
DNA (1680bp) protein (560aa)
AAA domain protein n=2 Tax=root RepID=R6VK16_9CLOT
AAA-domain protein {ECO:0000313|EMBL:AIK22035.1}; TaxID=1311 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus agalactiae.;"
hypothetical protein
Displaying 30 items

View Taxonomy