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L1_008_000M1_scaffold_1134

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1134_1
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..117
DNA (117bp) protein (39aa)
Type III restriction enzyme, res subunit n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H1Q5_9FIRM
Type III restriction enzyme, res subunit {ECO:0000313|EMBL:EDP22179.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
DNA or RNA helicases of superfamily II
L1_008_000M1_scaffold_1134_2
Eggerthella sp. CAG:1427, Eggerthella, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

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379..1581
DNA (1203bp) protein (401aa)
Site-specific recombinases DNA invertase Pin homologs n=1 Tax=Eggerthella sp. CAG:1427 RepID=R5G090_9ACTN
Site-specific recombinases DNA invertase Pin homologs {ECO:0000313|EMBL:CCY05881.1}; TaxID=1262874 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella; environmental samples.;" source="Eggerthella sp. CAG:1427.;"
Site-specific recombinases, DNA invertase Pin homologs
L1_008_000M1_scaffold_1134_3
Eggerthella sp. CAG:1427, Eggerthella, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

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1595..2026
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Eggerthella sp. CAG:1427 RepID=R5FYT1_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CCY05882.1}; TaxID=1262874 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella; environmental samples.;" source="Eggerthella sp. CAG:1427.;"
hypothetical protein
L1_008_000M1_scaffold_1134_4
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2402..4102)
DNA (1701bp) protein (567aa)
23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Clostridium bolteae 90A9 RepID=R0BZD9_9CLOT
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:ENZ49577.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
23S rRNA (uracil-5-)-methyltransferase RumA
L1_008_000M1_scaffold_1134_5
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4108..4488)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GN45_EUBLK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO37422.1}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
L1_008_000M1_scaffold_1134_6
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4895..6565)
DNA (1671bp) protein (557aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
ilvD; dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E9P0_9CLOT
L1_008_000M1_scaffold_1134_7
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6719..7696)
DNA (978bp) protein (326aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
tRNA-dihydrouridine synthase n=2 Tax=Clostridium RepID=A7VYP6_9CLOT
tRNA-U20-dihydrouridine synthase
L1_008_000M1_scaffold_1134_8
Clostridium sp. CAG:964, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7780..8169
DNA (390bp) protein (130aa)
Thioesterase family protein n=1 Tax=Clostridium sp. CAG:964 RepID=R6UAG6_9CLOT
Thioesterase family protein {ECO:0000313|EMBL:CDC79064.1}; TaxID=1262848 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:964.;"
Thioesterase superfamily
L1_008_000M1_scaffold_1134_9
Cellulomonas flavigena, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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8166..8819
DNA (654bp) protein (218aa)
Haloacid dehalogenase domain protein hydrolase n=1 Tax=Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS 134) RepID=D5UD13_CELFN
haloacid dehalogenase domain-containing protein hydrolase
Haloacid dehalogenase domain protein hydrolase {ECO:0000313|EMBL:ADG74350.1}; TaxID=446466 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS; 134).;"
L1_008_000M1_scaffold_1134_10
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9325..10944
DNA (1620bp) protein (540aa)
Acetolactate synthase {ECO:0000256|RuleBase:RU003591}; EC=2.2.1.6 {ECO:0000256|RuleBase:RU003591};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
acetolactate synthase, large subunit (EC:2.2.1.6)
acetolactate synthase n=1 Tax=Clostridium sporosphaeroides RepID=UPI000367B179
L1_008_000M1_scaffold_1134_11
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10962..11465
DNA (504bp) protein (168aa)
Acetolactate synthase, small subunit {ECO:0000313|EMBL:EDO63149.1}; EC=2.2.1.6 {ECO:0000313|EMBL:EDO63149.1};; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
Acetolactate synthase, small subunit n=2 Tax=Clostridium RepID=A7VND5_9CLOT
acetolactate synthase small subunit
L1_008_000M1_scaffold_1134_12
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11549..12556
DNA (1008bp) protein (336aa)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
ketol-acid reductoisomerase (EC:1.1.1.86)
Ketol-acid reductoisomerase n=2 Tax=Clostridium RepID=A7VND4_9CLOT
L1_008_000M1_scaffold_1134_13
unknown

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comp(12796..12921)
DNA (126bp) protein (42aa)

This feature has no annotations

L1_008_000M1_scaffold_1134_14
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13243..14352
DNA (1110bp) protein (370aa)
Uncharacterized protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0N509_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EJF41899.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
cell envelope-related transcriptional attenuator
L1_008_000M1_scaffold_1134_15
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14497..16446
DNA (1950bp) protein (650aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01228}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
metG2; methionine--tRNA ligase MetG (EC:6.1.1.10)
methionyl-tRNA synthetase n=1 Tax=Clostridium sporosphaeroides RepID=UPI00036F9D78
L1_008_000M1_scaffold_1134_16
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16565..17332
DNA (768bp) protein (256aa)
hydrolase, TatD family (EC:3.1.21.-)
Hydrolase, TatD family n=1 Tax=Clostridium sp. MSTE9 RepID=J1H6H7_9CLOT
Hydrolase, TatD family {ECO:0000313|EMBL:EJF40893.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
L1_008_000M1_scaffold_1134_17
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17957..18415
DNA (459bp) protein (153aa)
Hsp20/alpha crystallin family protein n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RK70_9FIRM
Hsp20/alpha crystallin family protein {ECO:0000313|EMBL:CDC45704.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Molecular chaperone (small heat shock protein)
L1_008_000M1_scaffold_1134_18
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18668..19528)
DNA (861bp) protein (287aa)
Glycosyl hydrolase family 28 family protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IHM4_9FIRM
Glycosyl hydrolase family 28 family protein {ECO:0000313|EMBL:CDE50803.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
glycoside hydrolase
L1_008_000M1_scaffold_1134_19
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19590..20534)
DNA (945bp) protein (315aa)
L-lactate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00488}; Short=L-LDH {ECO:0000256|HAMAP-Rule:MF_00488};; EC=1.1.1.27 {ECO:0000256|HAMAP-Rule:MF_00488};; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L-lactate dehydrogenase n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T5X5_ROSHA
L-lactate dehydrogenase
L1_008_000M1_scaffold_1134_20
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20688..21374)
DNA (687bp) protein (229aa)
HAD hydrolase family n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2DW92_CLOS4
HAD hydrolase family {ECO:0000313|EMBL:ERJ01191.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
hypothetical protein
L1_008_000M1_scaffold_1134_21
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21487..22836)
DNA (1350bp) protein (450aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI000366D858
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:EJF42143.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
L1_008_000M1_scaffold_1134_22
unknown

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23184..23312
DNA (129bp) protein (43aa)

This feature has no annotations

L1_008_000M1_scaffold_1134_23
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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23375..24022
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Clostridium sp. MSTE9 RepID=J1H9X9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EJF42113.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein
L1_008_000M1_scaffold_1134_24
Clostridium cellulovorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24642..26012)
DNA (1371bp) protein (457aa)
pyridoxal-phosphate dependent TrpB-like protein (EC:4.2.1.20)
Tryptophan synthase {ECO:0000256|SAAS:SAAS00015859}; EC=4.2.1.20 {ECO:0000256|SAAS:SAAS00015859};; TaxID=573061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 /; 743B).;"
Pyridoxal-phosphate dependent TrpB-like enzyme n=1 Tax=Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 / 743B) RepID=D9SQL0_CLOC7
L1_008_000M1_scaffold_1134_25
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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26607..28109
DNA (1503bp) protein (501aa)
23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6ZBP6_9FIRM
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:CDD27902.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
23S rRNA (uracil-5-)-methyltransferase RumA
L1_008_000M1_scaffold_1134_26
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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28462..29586
DNA (1125bp) protein (375aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7ESB6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE05346.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
hypothetical protein
L1_008_000M1_scaffold_1134_27
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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29622..30482
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7EV30_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE05347.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
hypothetical protein
L1_008_000M1_scaffold_1134_28
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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30525..31265
DNA (741bp) protein (247aa)
Radical SAM domain protein n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7ESZ3_9FIRM
Radical SAM domain protein {ECO:0000313|EMBL:CDE05348.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
radical SAM protein
L1_008_000M1_scaffold_1134_29
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31276..33465
DNA (2190bp) protein (730aa)
Adenine specific DNA methylase Mod (EC:2.1.1.72)
DNA methylase n=1 Tax=Clostridium botulinum Af84 RepID=S8BNT9_CLOBO
Adenine specific DNA methylase Mod {ECO:0000313|EMBL:CDE05349.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
L1_008_000M1_scaffold_1134_30
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33468..36332
DNA (2865bp) protein (955aa)
Type III restriction protein res subunit n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7ERV2_9FIRM
Type III restriction protein res subunit {ECO:0000313|EMBL:CDE05350.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
type III restriction protein res subunit
Displaying items 1-30 of 32 in total

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