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L1_008_000M1_scaffold_1374

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1374_1
Phascolarctobacterium sp. CAG:207, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(3..716)
DNA (714bp) protein (238aa)
Transporter auxin efflux carrier family protein n=1 Tax=Phascolarctobacterium sp. CAG:207 RepID=R6I9S1_9FIRM
Transporter auxin efflux carrier family protein {ECO:0000313|EMBL:CDB46968.1}; TaxID=1262914 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium sp. CAG:207.;"
auxin efflux carrier
L1_008_000M1_scaffold_1374_2
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(802..3216)
DNA (2415bp) protein (805aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
leuS; Leucine-tRNA ligase (EC:6.1.1.4)
Leucine--tRNA ligase n=1 Tax=Clostridium sp. CAG:1013 RepID=R5ADY5_9CLOT
L1_008_000M1_scaffold_1374_3
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3278..3637)
DNA (360bp) protein (120aa)
Ribosomal silencing factor RsfS n=1 Tax=Clostridium sp. MSTE9 RepID=J0MZP2_9CLOT
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
iojap-related protein
L1_008_000M1_scaffold_1374_4
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3656..4249)
DNA (594bp) protein (198aa)
Hydrolase HD family n=2 Tax=Clostridium RepID=R6MYB0_9CLOT
Hydrolase HD family {ECO:0000313|EMBL:CDC03800.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
hypothetical protein
L1_008_000M1_scaffold_1374_5
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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comp(4277..4879)
DNA (603bp) protein (201aa)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
nicotinate (nicotinamide) nucleotide adenylyltransferase (EC:2.7.7.18)
Probable nicotinate-nucleotide adenylyltransferase n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6Y715_9FIRM
L1_008_000M1_scaffold_1374_6
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4885..5196)
DNA (312bp) protein (104aa)
Putative RNA-binding protein YhbY family n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A3Y9_9CLOT
Putative RNA-binding protein YhbY family {ECO:0000313|EMBL:CCX37578.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
conserved hypothetical protein TIGR00253
L1_008_000M1_scaffold_1374_7
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5218..5802)
DNA (585bp) protein (195aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
RdgB/HAM1 family non-canonical purine NTP pyrophosphatase (EC:3.6.1.15)
Non-canonical purine NTP pyrophosphatase n=1 Tax=Clostridium sp. MSTE9 RepID=J1H2U9_9CLOT
L1_008_000M1_scaffold_1374_8
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5817..6728)
DNA (912bp) protein (304aa)
Signal recognition particle receptor FtsY n=2 Tax=Ruminococcus RepID=D4L808_9FIRM
signal recognition particle-docking protein FtsY
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_008_000M1_scaffold_1374_9
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6912..10490)
DNA (3579bp) protein (1193aa)
chromosome segregation protein SMC n=1 Tax=Clostridium sporosphaeroides RepID=UPI00037CADBC
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
chromosome segregation protein SMC
L1_008_000M1_scaffold_1374_10
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10623..11657)
DNA (1035bp) protein (345aa)
Radical SAM domain protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0WU16_9CLOT
Radical SAM domain protein {ECO:0000313|EMBL:EJF39866.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
radical SAM protein
L1_008_000M1_scaffold_1374_11
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11657..12367)
DNA (711bp) protein (237aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
RNAse III (EC:3.1.26.3)
Ribonuclease 3 n=1 Tax=Clostridium sp. MSTE9 RepID=J0N6P2_9CLOT
L1_008_000M1_scaffold_1374_12
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12364..13371)
DNA (1008bp) protein (336aa)
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase {ECO:0000256|HAMAP-Rule:MF_00019}; Acyl-[acyl-carrier-protein]--phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; Phosphate-acyl-ACP acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
Phosphate acyltransferase n=1 Tax=Clostridium leptum DSM 753 RepID=A7VXH1_9CLOT
phosphate:acyl-[acyl carrier protein] acyltransferase
L1_008_000M1_scaffold_1374_13
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13508..14836)
DNA (1329bp) protein (443aa)
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO {ECO:0000256|HAMAP-Rule:MF_01037}; EC=2.1.1.74 {ECO:0000256|HAMAP-Rule:MF_01037};; Folate-dependent tRNA (uracil-5-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; Folate-dependent tRNA(M-5-U54)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO n=1 Tax=Clostridium sp. MSTE9 RepID=J1H2S3_9CLOT
tRNA:m(5)U-54 methyltransferase
L1_008_000M1_scaffold_1374_14
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14833..16935)
DNA (2103bp) protein (701aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase I n=1 Tax=Clostridium sporosphaeroides RepID=UPI000375EDC0
L1_008_000M1_scaffold_1374_15
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17094..18329)
DNA (1236bp) protein (412aa)
DNA protecting protein DprA n=1 Tax=Clostridium sp. MSTE9 RepID=J0WV89_9CLOT
DNA protecting protein DprA {ECO:0000313|EMBL:EJF40251.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein
L1_008_000M1_scaffold_1374_16
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18319..19128)
DNA (810bp) protein (270aa)
RNA methyltransferase, TrmH family n=1 Tax=Clostridium sp. MSTE9 RepID=J0WV58_9CLOT
RNA methyltransferase, TrmH family {ECO:0000313|EMBL:EJF40211.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
rRNA methylases
L1_008_000M1_scaffold_1374_17
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(19309..19662)
DNA (354bp) protein (118aa)
50S ribosomal protein L20 n=1 Tax=Clostridium sp. MSTE9 RepID=J1H3Y6_9CLOT
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
LSU ribosomal protein L20P
L1_008_000M1_scaffold_1374_18
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists


comp(19707..19913)
DNA (207bp) protein (69aa)
50S ribosomal protein L35 n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6YL39_9FIRM
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
LSU ribosomal protein L35P
L1_008_000M1_scaffold_1374_19
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19944..20513)
DNA (570bp) protein (190aa)
Translation initiation factor IF-3 n=1 Tax=Clostridium leptum CAG:27 RepID=R6MY94_9CLOT
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
translation initiation factor IF-3
L1_008_000M1_scaffold_1374_20
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20683..24114)
DNA (3432bp) protein (1144aa)
ATP-dependent helicase/nuclease subunit A {ECO:0000256|HAMAP-Rule:MF_01451, ECO:0000256|SAAS:SAAS00044589}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01451, ECO:0000256|SAAS:SAAS00274943};; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01451, ECO:0000256|SAAS:SAAS00145970};; ATP-dependent helicase/nuclease AddA {ECO:0000256|HAMAP-Rule:MF_01451}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
ATP-dependent helicase/nuclease subunit A n=1 Tax=Clostridium sp. MSTE9 RepID=J0WTW6_9CLOT
recombination helicase AddA
L1_008_000M1_scaffold_1374_21
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24099..27320)
DNA (3222bp) protein (1074aa)
helicase n=1 Tax=Clostridium sporosphaeroides RepID=UPI00036ACFB6
Putative helicase-exonuclease AddAB, AddB subunit {ECO:0000313|EMBL:EJF39986.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein
L1_008_000M1_scaffold_1374_22
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27325..27921)
DNA (597bp) protein (199aa)
Stage II sporulation protein R n=2 Tax=Clostridium RepID=A7VXI2_9CLOT
Stage II sporulation protein R {ECO:0000313|EMBL:CDC03781.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
stage II sporulation protein R
L1_008_000M1_scaffold_1374_23
Ethanoligenens harbinense, Ethanoligenens, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(28031..28888)
DNA (858bp) protein (286aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=663278 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ethanoligenens.;" source="Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033; / YUAN-3).;"
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U4B6_ETHHY
L1_008_000M1_scaffold_1374_24
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

comp(28927..29658)
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6Y7M5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD27299.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
hypothetical protein
L1_008_000M1_scaffold_1374_25
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30061..31236)
DNA (1176bp) protein (392aa)
Aminotransferase, class I/II {ECO:0000313|EMBL:EJF39980.1}; EC=2.6.1.- {ECO:0000313|EMBL:EJF39980.1};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
yugH; putative aminotransferase YugH (EC:2.6.1.-)
aminotransferase n=1 Tax=Clostridium sporosphaeroides RepID=UPI0003705516
L1_008_000M1_scaffold_1374_26
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31229..31714)
DNA (486bp) protein (162aa)
Transcriptional regulator, AsnC family n=1 Tax=Clostridium sp. MSTE9 RepID=J0WU90_9CLOT
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:EJF39941.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
transcriptional regulator, AsnC family
L1_008_000M1_scaffold_1374_27
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32107..32376
DNA (270bp) protein (90aa)
UPF0237 protein HMPREF1141_2652 n=1 Tax=Clostridium sp. MSTE9 RepID=J1H4S0_9CLOT
UPF0237 protein HMPREF1141_2652 {ECO:0000256|HAMAP-Rule:MF_01054}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
conserved hypothetical protein
L1_008_000M1_scaffold_1374_28
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32413..33771
DNA (1359bp) protein (453aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI00036D9FBF
UPF0210 protein HMPREF1141_2651 {ECO:0000256|HAMAP-Rule:MF_01221}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
UPF0210 protein
L1_008_000M1_scaffold_1374_29
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33975..34286
DNA (312bp) protein (104aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI00035F9B28
Uncharacterized protein {ECO:0000313|EMBL:EJF40016.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein
L1_008_000M1_scaffold_1374_30
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34325..35377
DNA (1053bp) protein (351aa)
ATP synthase, subunit C n=1 Tax=Clostridium sp. MSTE9 RepID=J0WU34_9CLOT
ATP synthase, subunit C {ECO:0000313|EMBL:EJF39886.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
Archaeal/vacuolar-type H+-ATPase subunit C
Displaying items 1-30 of 51 in total

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