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L1_008_000M1_scaffold_1491

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1491_1
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..141
DNA (141bp) protein (47aa)
Phage DNA replication protein (Predicted replicative helicase loader) n=1 Tax=Clostridium cf. saccharolyticum K10 RepID=D6DI73_CLOSC
phage DNA replication protein (predicted replicative helicase loader)
Phage DNA replication protein (Predicted replicative helicase loader) {ECO:0000313|EMBL:CBK77397.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L1_008_000M1_scaffold_1491_2
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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156..350
DNA (195bp) protein (65aa)
Excisionase family DNA binding domain-containing protein n=1 Tax=Clostridium clostridioforme 90A7 RepID=N9YTU7_9CLOT
Excisionase family DNA binding domain-containing protein {ECO:0000313|EMBL:ENZ15478.1}; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
Excisionase from transposon Tn916.
L1_008_000M1_scaffold_1491_3
[Clostridium] citroniae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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436..1635
DNA (1200bp) protein (400aa)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HSJ7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHE95728.1}; TaxID=742733 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] citroniae WAL-17108.;"
Site-specific recombinase XerD
L1_008_000M1_scaffold_1491_4
Lachnospiraceae bacterium CAG:364, Clostridiales, Clostridia, Firmicutes, Bacteria

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1861..2262
DNA (402bp) protein (134aa)
Protein-tyrosine-phosphatase (EC:3.1.3.48)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 6_1_63FAA RepID=F3AFU4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC06950.1}; TaxID=1262983 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:364.;"
L1_008_000M1_scaffold_1491_5
unknown

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comp(2235..2429)
DNA (195bp) protein (65aa)

This feature has no annotations

L1_008_000M1_scaffold_1491_6
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2426..3064)
DNA (639bp) protein (213aa)
ribonuclease M5 n=1 Tax=Clostridium sporosphaeroides RepID=UPI000361EA9C
Putative ribonuclease M5 {ECO:0000313|EMBL:EJF41306.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
TOPRIM domain-containing protein
L1_008_000M1_scaffold_1491_7
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3061..4113)
DNA (1053bp) protein (351aa)
DNA polymerase III, delta subunit {ECO:0000313|EMBL:EJF41315.1}; EC=2.7.7.7 {ECO:0000313|EMBL:EJF41315.1};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI00035C33A5
DNA polymerase III subunit delta
L1_008_000M1_scaffold_1491_8
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4114..6318)
DNA (2205bp) protein (735aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI00036492A3
Competence protein {ECO:0000313|EMBL:EJF41296.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
putative membrane protein
L1_008_000M1_scaffold_1491_9
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6417..6980)
DNA (564bp) protein (188aa)
Phosphoribosyl transferase domain protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0N9P6_9CLOT
Phosphoribosyl transferase domain protein {ECO:0000313|EMBL:EJF41292.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
phosphoribosyltransferase
L1_008_000M1_scaffold_1491_10
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7022..7363)
DNA (342bp) protein (114aa)
Histidine triad domain protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6N2G9_9CLOT
Histidine triad domain protein {ECO:0000313|EMBL:CDC05245.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
HIT domain protein
L1_008_000M1_scaffold_1491_11
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7564..10197)
DNA (2634bp) protein (878aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
alanyl-tRNA synthetase (EC:6.1.1.7)
alanyl-tRNA synthase n=1 Tax=Clostridium sporosphaeroides RepID=UPI000368641D
L1_008_000M1_scaffold_1491_12
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10615..12231)
DNA (1617bp) protein (539aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129)
Penicillin-binding protein, transpeptidase domain protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0N9R3_9CLOT
Penicillin-binding protein, transpeptidase domain protein {ECO:0000313|EMBL:EJF41312.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
L1_008_000M1_scaffold_1491_13
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12319..13542)
DNA (1224bp) protein (408aa)
Peptidase, U32 family {ECO:0000313|EMBL:EJF41668.1}; EC=3.4.-.- {ECO:0000313|EMBL:EJF41668.1};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
Collagenase and related proteases (EC:3.4.-.-)
peptidase U32 n=1 Tax=Clostridium sporosphaeroides RepID=UPI000361E541
L1_008_000M1_scaffold_1491_14
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13539..14867)
DNA (1329bp) protein (443aa)
YceG family protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0N4F8_9CLOT
YceG family protein {ECO:0000313|EMBL:EJF41679.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
Predicted periplasmic solute-binding protein
L1_008_000M1_scaffold_1491_15
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14842..15486)
DNA (645bp) protein (215aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
5,10-methenyltetrahydrofolate synthetase (EC:6.3.3.2)
5-formyltetrahydrofolate cyclo-ligase n=2 Tax=Clostridium RepID=A7VTJ4_9CLOT
L1_008_000M1_scaffold_1491_16
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15523..16068)
DNA (546bp) protein (182aa)
DJ-1 family protein n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RD95_9FIRM
DJ-1 family protein {ECO:0000313|EMBL:CDC43274.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
DJ-1 family protein
L1_008_000M1_scaffold_1491_17
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16124..17011)
DNA (888bp) protein (296aa)
Acetyltransferase, GNAT family n=1 Tax=Clostridium sp. MSTE9 RepID=J0N4J0_9CLOT
Acetyltransferase, GNAT family {ECO:0000313|EMBL:EJF41714.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
N-acetyltransferase
L1_008_000M1_scaffold_1491_18
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17008..17907)
DNA (900bp) protein (300aa)
PF09924 family protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0WZG4_9CLOT
PF09924 family protein {ECO:0000313|EMBL:EJF41711.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein
L1_008_000M1_scaffold_1491_19
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17950..18636)
DNA (687bp) protein (229aa)
dTMP kinase {ECO:0000313|EMBL:EJF41669.1}; EC=2.7.4.9 {ECO:0000313|EMBL:EJF41669.1};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
thymidylate kinase (EC:2.7.4.9)
dTMP kinase n=1 Tax=Clostridium sp. MSTE9 RepID=J0N4F0_9CLOT
L1_008_000M1_scaffold_1491_20
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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comp(18633..19397)
DNA (765bp) protein (255aa)
Thymidylate synthase ThyX {ECO:0000256|HAMAP-Rule:MF_01408}; Short=TS {ECO:0000256|HAMAP-Rule:MF_01408};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_01408};; EC=2.1.1.148 {ECO:0000256|HAMAP-Rule:MF_01408};; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
Thymidylate synthase ThyX n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6YP24_9FIRM
thymidylate synthase, flavin-dependent
L1_008_000M1_scaffold_1491_21
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19835..20629)
DNA (795bp) protein (265aa)
Probable endonuclease 4 {ECO:0000256|HAMAP-Rule:MF_00152}; EC=3.1.21.2 {ECO:0000256|HAMAP-Rule:MF_00152};; Endodeoxyribonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; Endonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
apurinic endonuclease APN1 (EC:3.1.21.2)
Probable endonuclease 4 n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M5N6_9FIRM
L1_008_000M1_scaffold_1491_22
unknown

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20647..21321
DNA (675bp) protein (225aa)

This feature has no annotations

L1_008_000M1_scaffold_1491_23

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comp(21141..21530)
DNA (390bp) protein (130aa)
Uncharacterized protein (Fragment) n=1 Tax=gut metagenome RepID=J9GIS6_9ZZZZ
Uncultured bacterium extrachromosomal DNA RGI00032 {ECO:0000313|EMBL:CDL65526.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
L1_008_000M1_scaffold_1491_24
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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21725..22225
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z909_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD44833.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
L1_008_000M1_scaffold_1491_25
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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22346..22498
DNA (153bp) protein (51aa)
Uncharacterized protein n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LH35_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFY03910.1}; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
Displaying 25 items

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