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L1_008_000M1_scaffold_119

Search features with annotation key words

Displaying items 1-30 of 98 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_119_1
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(207..2513)
DNA (2307bp) protein (769aa)
ATPase family associated with various cellular activities (AAA) n=1 Tax=Clostridium leptum CAG:27 RepID=R6N7F0_9CLOT
ATPase family associated with various cellular activities (AAA) {ECO:0000313|EMBL:CDC04319.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
ATPases with chaperone activity, ATP-binding subunit
L1_008_000M1_scaffold_119_2
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2558..3169)
DNA (612bp) protein (204aa)
Phosphatidylglycerophosphate synthase (EC:2.7.8.5)
Putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Clostridium sp. MSTE9 RepID=J0NBD7_9CLOT
Putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:EJF41952.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
L1_008_000M1_scaffold_119_3
Pseudohaliea rubra, Pseudohaliea, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3242..3763)
DNA (522bp) protein (174aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI000370A007
Colicin V production protein {ECO:0000313|EMBL:KGE02799.1}; TaxID=1265313 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade; Pseudohaliea.;" source="Haliea rubra DSM 19751.;"
L1_008_000M1_scaffold_119_4
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3813..5033)
DNA (1221bp) protein (407aa)
Uncharacterized protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0NBC7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EJF41942.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein
L1_008_000M1_scaffold_119_5
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5026..5811)
DNA (786bp) protein (262aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
pseudouridylate synthase I (EC:5.4.99.12)
tRNA pseudouridine synthase A n=1 Tax=Clostridium sp. MSTE9 RepID=J1H8K4_9CLOT
L1_008_000M1_scaffold_119_6
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6090..6905)
DNA (816bp) protein (272aa)
transporter n=1 Tax=Clostridium sporosphaeroides RepID=UPI000370A348
Cobalt transport protein {ECO:0000313|EMBL:EJF41971.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
ABC-type cobalt transport system, permease component CbiQ and related transporters
L1_008_000M1_scaffold_119_7
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6902..7765)
DNA (864bp) protein (288aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
ABC transporter ATP-binding protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5AH48_9CLOT
ABC-type cobalt transport system, ATPase component
L1_008_000M1_scaffold_119_8
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7975..8850)
DNA (876bp) protein (292aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
Cobalt ABC transporter, ATP-binding protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VWM7_9CLOT
ABC-type cobalt transport system, ATPase component
L1_008_000M1_scaffold_119_9
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

comp(8869..9729)
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6YQ39_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD30711.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
Predicted SAM-dependent methyltransferases
L1_008_000M1_scaffold_119_10
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10014..11363)
DNA (1350bp) protein (450aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
phosphoglucosamine mutase (EC:5.4.2.10)
Phosphoglucosamine mutase n=2 Tax=Clostridium RepID=A7VWM5_9CLOT
L1_008_000M1_scaffold_119_11
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11499..12554)
DNA (1056bp) protein (352aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Clostridium sp. MSTE9 RepID=J0X0A6_9CLOT
Holliday junction DNA helicase, RuvB subunit
L1_008_000M1_scaffold_119_12
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12599..13210)
DNA (612bp) protein (204aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
Holliday junction DNA helicase RuvA n=1 Tax=Clostridium sporosphaeroides RepID=UPI0003825599
Holliday junction DNA helicase RuvA
L1_008_000M1_scaffold_119_13
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13207..13737)
DNA (531bp) protein (177aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
ruvC; Crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Clostridium sp. MSTE9 RepID=J0N590_9CLOT
L1_008_000M1_scaffold_119_14
Paenibacillus borealis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14335..14979)
DNA (645bp) protein (215aa)
Phosphoglycolate phosphatase n=1 Tax=Bhargavaea cecembensis DSE10 RepID=M7NEF0_9BACL
HAD family hydrolase
HAD family hydrolase {ECO:0000313|EMBL:AIQ59315.1}; TaxID=160799 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus borealis.;"
L1_008_000M1_scaffold_119_15
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15151..15645)
DNA (495bp) protein (165aa)
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase {ECO:0000256|PIRNR:PIRNR006181}; EC=4.2.-.- {ECO:0000256|PIRNR:PIRNR006181};; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2D6X7_CLOS4
ybaK/ebsC protein
L1_008_000M1_scaffold_119_16
Clostridium sp. CAG:265, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16042..17547
DNA (1506bp) protein (502aa)
Glycerol kinase {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376}; EC=2.7.1.30 {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376};; ATP:glycerol 3-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00186}; Glycerokinase {ECO:0000256|HAMAP-Rule:MF_00186}; TaxID=1262787 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:265.;"
Glycerol kinase n=1 Tax=Clostridium sp. CAG:265 RepID=R6KZA2_9CLOT
glpK; glycerol kinase
L1_008_000M1_scaffold_119_17
unknown

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comp(17865..20657)
DNA (2793bp) protein (931aa)

This feature has no annotations

L1_008_000M1_scaffold_119_18
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20975..22381)
DNA (1407bp) protein (469aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
cysS; Cysteine-tRNA ligase (EC:6.1.1.16)
Cysteine--tRNA ligase n=1 Tax=Clostridium leptum CAG:27 RepID=R6N8V8_9CLOT
L1_008_000M1_scaffold_119_19
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22378..23109)
DNA (732bp) protein (244aa)
Serine acetyltransferase {ECO:0000256|PIRNR:PIRNR000441}; EC=2.3.1.30 {ECO:0000256|PIRNR:PIRNR000441};; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
serine O-acetyltransferase (EC:2.3.1.30)
Serine acetyltransferase n=1 Tax=Clostridium leptum CAG:27 RepID=R6N189_9CLOT
L1_008_000M1_scaffold_119_20
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23540..24142)
DNA (603bp) protein (201aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:EJF41847.1}; EC=2.7.8.5 {ECO:0000313|EMBL:EJF41847.1};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Clostridium sp. MSTE9 RepID=J0NB57_9CLOT
L1_008_000M1_scaffold_119_21
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24161..25492)
DNA (1332bp) protein (444aa)
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
SSU ribosomal protein S12P methylthiotransferase (EC:1.3.1.74 2.-.-.-)
Ribosomal protein S12 methylthiotransferase RimO n=1 Tax=Clostridium sp. MSTE9 RepID=J0N4T8_9CLOT
L1_008_000M1_scaffold_119_22
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25724..26344)
DNA (621bp) protein (207aa)
Regulatory protein RecX n=1 Tax=Clostridium leptum DSM 753 RepID=A7VTU0_9CLOT
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
hypothetical protein
L1_008_000M1_scaffold_119_23
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(26344..27570)
DNA (1227bp) protein (409aa)
Protein RecA n=1 Tax=Clostridium sp. MSTE9 RepID=J0N4U7_9CLOT
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
RecA protein
L1_008_000M1_scaffold_119_24
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28465..29337)
DNA (873bp) protein (291aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI0003718B13
Protein-(Glutamine-N5) methyltransferase, release factor-specific {ECO:0000313|EMBL:EJF41841.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
protein-(glutamine-N5) methyltransferase
L1_008_000M1_scaffold_119_25
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29334..30290)
DNA (957bp) protein (319aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI00037C7589
PF07136 family protein {ECO:0000313|EMBL:EJF41822.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
Predicted metal-dependent enzyme
L1_008_000M1_scaffold_119_26
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30283..31743)
DNA (1461bp) protein (487aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
GHKL domain protein n=1 Tax=Clostridium sp. MSTE9 RepID=J1H889_9CLOT
integral membrane sensor signal transduction histidine kinase
L1_008_000M1_scaffold_119_27
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31797..32501)
DNA (705bp) protein (235aa)
PhoP family transcriptional regulator n=1 Tax=Clostridium sporosphaeroides RepID=UPI00036DDFAF
Response regulator receiver domain protein {ECO:0000313|EMBL:EJF41817.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L1_008_000M1_scaffold_119_28
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32542..33960)
DNA (1419bp) protein (473aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI00036DAF46
Uncharacterized protein {ECO:0000313|EMBL:EJF41833.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein
L1_008_000M1_scaffold_119_29
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34040..35083)
DNA (1044bp) protein (348aa)
A/G-specific adenine glycosylase (EC:3.2.2.-)
A/G-specific adenine glycosylase n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A424_9CLOT
A/G-specific adenine glycosylase {ECO:0000313|EMBL:CCX37623.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
L1_008_000M1_scaffold_119_30
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35250..36998)
DNA (1749bp) protein (583aa)
Superfamily II DNA and RNA helicases (EC:3.6.1.-)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI0003781ADA
DEAD/DEAH box helicase {ECO:0000313|EMBL:EJF41558.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
Displaying items 1-30 of 98 in total

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