ggKbase home page

L1_008_000M1_scaffold_202

Search features with annotation key words

Displaying items 1-30 of 93 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_202_1
unknown

Not on your lists

comp(66..182)
DNA (117bp) protein (39aa)

This feature has no annotations

L1_008_000M1_scaffold_202_2
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(179..997)
DNA (819bp) protein (273aa)
ABC transporter permease n=1 Tax=Clostridium sporosphaeroides RepID=UPI000377F92F
ABC transporter, permease protein {ECO:0000313|EMBL:EJF41274.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
ABC-type spermidine/putrescine transport system, permease component I
L1_008_000M1_scaffold_202_3
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(994..2133)
DNA (1140bp) protein (380aa)
Spermidine/putrescine import ATP-binding protein PotA {ECO:0000256|HAMAP-Rule:MF_01726}; EC=3.6.3.31 {ECO:0000256|HAMAP-Rule:MF_01726};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
potA; spermidine/putrescine ABC transporter ATP-binding protein (EC:3.6.3.31)
spermidine/putrescine ABC transporter ATP-binding protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI00037DA99C
L1_008_000M1_scaffold_202_4
Eubacterium sp. CAG:603, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2590..3894)
DNA (1305bp) protein (435aa)
Diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase n=1 Tax=Eubacterium sp. CAG:603 RepID=R5NLF5_9FIRM
Diaminopimelate decarboxylase {ECO:0000313|EMBL:CCZ04598.1}; TaxID=1262891 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:603.;"
L1_008_000M1_scaffold_202_5
unknown

Not on your lists

comp(3878..4054)
DNA (177bp) protein (59aa)

This feature has no annotations

L1_008_000M1_scaffold_202_6
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4128..6110)
DNA (1983bp) protein (661aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
ligA; DNA ligase (EC:6.5.1.2)
NAD-dependent DNA ligase LigA n=1 Tax=Clostridium sporosphaeroides RepID=UPI000372E323
L1_008_000M1_scaffold_202_7
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6598..6843
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VU40_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDO61686.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
hypothetical protein
L1_008_000M1_scaffold_202_8
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

6995..7288
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6YJ62_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD31459.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
hypothetical protein
L1_008_000M1_scaffold_202_9
Firmicutes bacterium CAG:646, Firmicutes, Bacteria

Not on your lists

7623..8378
DNA (756bp) protein (252aa)
Transcriptional regulator DeoR family n=1 Tax=Firmicutes bacterium CAG:646 RepID=R5R7T9_9FIRM
Transcriptional regulator DeoR family {ECO:0000313|EMBL:CCZ34839.1}; TaxID=1262995 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:646.;"
iolR; HTH-type transcriptional regulator IolR
L1_008_000M1_scaffold_202_10
Paenibacillus sp. JDR-2, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8568..10037)
DNA (1470bp) protein (490aa)
hypothetical protein n=1 Tax=Bacillus sp. 37MA RepID=UPI0003603EDD
xylulokinase
Xylulokinase {ECO:0000313|EMBL:ACT00491.1}; TaxID=324057 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. (strain JDR-2).;"
L1_008_000M1_scaffold_202_11
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10225..11736)
DNA (1512bp) protein (504aa)
Methylmalonate-semialdehyde dehydrogenase n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9R1F4_CLOSW
Methylmalonate-semialdehyde dehydrogenase {ECO:0000313|EMBL:KEZ87836.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
methylmalonate-semialdehyde dehydrogenase
L1_008_000M1_scaffold_202_12
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11751..12530)
DNA (780bp) protein (260aa)
Myo-inositol catabolism IolB domain protein n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9R1E9_CLOSW
myo-inositol catabolism IolB domain-containing protein
5-deoxyglucuronate isomerase {ECO:0000313|EMBL:KEZ87840.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
L1_008_000M1_scaffold_202_13
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12548..13561)
DNA (1014bp) protein (338aa)
Oxidoreductase domain protein n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9R1F0_CLOSW
oxidoreductase domain-containing protein
Oxidoreductase domain protein {ECO:0000313|EMBL:ADL06473.1}; TaxID=610130 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533; / WM1).;"
L1_008_000M1_scaffold_202_14
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13584..14477)
DNA (894bp) protein (298aa)
Inosose dehydratase {ECO:0000256|HAMAP-Rule:MF_01672}; EC=4.2.1.44 {ECO:0000256|HAMAP-Rule:MF_01672};; 2-keto-myo-inositol dehydratase {ECO:0000256|HAMAP-Rule:MF_01672}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
2-keto-myo-inositol dehydratase (EC:4.2.1.44)
inosose dehydratase n=1 Tax=Blautia producta RepID=UPI0003602D0B
L1_008_000M1_scaffold_202_15
Anaerostipes sp. CAG:276, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14606..16537)
DNA (1932bp) protein (644aa)
Thiamine pyrophosphate enzyme n=2 Tax=Anaerostipes RepID=R6R6I1_9FIRM
Thiamine pyrophosphate enzyme {ECO:0000313|EMBL:CDC38521.1}; TaxID=1262699 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes; environmental samples.;" source="Anaerostipes sp. CAG:276.;"
iolD; myo-inositol catabolism protein IolD
L1_008_000M1_scaffold_202_16
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16550..17563)
DNA (1014bp) protein (338aa)
5-dehydro-2-deoxygluconokinase {ECO:0000256|HAMAP-Rule:MF_01668}; EC=2.7.1.92 {ECO:0000256|HAMAP-Rule:MF_01668};; 2-deoxy-5-keto-D-gluconate kinase {ECO:0000256|HAMAP-Rule:MF_01668}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
5-dehydro-2-deoxygluconokinase n=2 Tax=root RepID=R5N5L9_9FIRM
myo-inositol catabolism protein IolC
L1_008_000M1_scaffold_202_17
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17560..18423)
DNA (864bp) protein (288aa)
ketose-bisphosphate aldolase (EC:4.1.2.29)
Ketose-bisphosphate aldolase {ECO:0000313|EMBL:ADL06478.1}; EC=4.1.2.29 {ECO:0000313|EMBL:ADL06478.1};; TaxID=610130 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533; / WM1).;"
Ketose-bisphosphate aldolase n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9R1F5_CLOSW
L1_008_000M1_scaffold_202_18
Clostridium sp. L2-50, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18572..19198)
DNA (627bp) protein (209aa)
Putative orotate phosphoribosyltransferase (EC:2.4.2.10)
Uncharacterized protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VFC3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDO57874.1}; TaxID=411489 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. L2-50.;"
L1_008_000M1_scaffold_202_19
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19502..20242
DNA (741bp) protein (247aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6Q0U1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC30333.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
hypothetical protein
L1_008_000M1_scaffold_202_20
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20655..22031)
DNA (1377bp) protein (459aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI0003775CDE
Penicillin-binding protein, transpeptidase domain protein {ECO:0000313|EMBL:EJF40594.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
putative penicillin-binding protein A
L1_008_000M1_scaffold_202_21
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22038..23786)
DNA (1749bp) protein (583aa)
FHA domain protein n=1 Tax=Clostridium sp. MSTE9 RepID=J1H532_9CLOT
FHA domain protein {ECO:0000313|EMBL:EJF40625.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein
L1_008_000M1_scaffold_202_22
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24006..24851)
DNA (846bp) protein (282aa)
Pyridoxal kinase {ECO:0000256|SAAS:SAAS00088591}; EC=2.7.1.35 {ECO:0000256|SAAS:SAAS00088591};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
pyridoxal kinase n=1 Tax=Clostridium sporosphaeroides RepID=UPI000368BBF9
Phosphomethylpyrimidine kinase type-1
L1_008_000M1_scaffold_202_23
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24860..25615)
DNA (756bp) protein (252aa)
UDP-N-acetylglucosamine pyrophosphorylase n=1 Tax=Ruminococcus flavefaciens RepID=UPI0002F72881
UDP-N-acetylglucosamine pyrophosphorylase {ECO:0000313|EMBL:EWM53639.1}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
hypothetical protein
L1_008_000M1_scaffold_202_24
[Clostridium] litorale, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25711..26583)
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IZI9_9BACL
Uncharacterized protein {ECO:0000313|EMBL:KDR96740.1}; TaxID=1121324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] litorale DSM 5388.;"
hypothetical protein
L1_008_000M1_scaffold_202_25
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26580..27254)
DNA (675bp) protein (225aa)
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E (EC:3.1.3.18)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI00037B2527
Putative phosphoglycolate phosphatase, bacterial {ECO:0000313|EMBL:EJF41603.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
L1_008_000M1_scaffold_202_26
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27286..28728)
DNA (1443bp) protein (481aa)
Polysaccharide biosynthesis protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BJV5_9CLOT
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:CDA61059.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
epsM; protein involved in exopolysaccharide synthesis
L1_008_000M1_scaffold_202_27
Roseburia sp. CAG:100, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29071..30936)
DNA (1866bp) protein (622aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:100 RepID=R7R2Q9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF45207.1}; TaxID=1262940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:100.;"
ATP-dependent DNA helicase RecQ
L1_008_000M1_scaffold_202_28
unknown

Not on your lists

31303..31500
DNA (198bp) protein (66aa)

This feature has no annotations

L1_008_000M1_scaffold_202_29
unknown

Not on your lists

31523..31708
DNA (186bp) protein (62aa)

This feature has no annotations

L1_008_000M1_scaffold_202_30
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31904..32323)
DNA (420bp) protein (140aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=A7VWL0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC04336.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
Displaying items 1-30 of 93 in total

View Taxonomy