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L1_008_000M1_scaffold_276

Search features with annotation key words

Displaying items 1-30 of 81 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_276_1
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..101)
DNA (99bp) protein (33aa)
TnpX site-specific recombinase family protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YP69_9FIRM
TnpX site-specific recombinase family protein {ECO:0000313|EMBL:EHM52861.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
L1_008_000M1_scaffold_276_2
Firmicutes bacterium CAG:145, Firmicutes, Bacteria

Not on your lists

comp(105..362)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6ETD3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB03175.1}; TaxID=1263005 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:145.;"
L1_008_000M1_scaffold_276_3
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

666..1040
DNA (375bp) protein (125aa)
Transcriptional regulator, GntR family n=1 Tax=Clostridium sp. M62/1 RepID=D4C6F9_9CLOT
Transcriptional regulator, GntR family {ECO:0000313|EMBL:EFE14147.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
GntR family transcriptional regulator
L1_008_000M1_scaffold_276_4
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1042..1521
DNA (480bp) protein (160aa)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium sp. M62/1 RepID=D4C6G0_9CLOT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFE14148.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
ABC transporter ATP-binding protein
L1_008_000M1_scaffold_276_5
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1496..1831
DNA (336bp) protein (112aa)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium sp. M62/1 RepID=D4C6G0_9CLOT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFE14148.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
ABC transporter ATP-binding protein
L1_008_000M1_scaffold_276_6
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1903..2142
DNA (240bp) protein (80aa)
AAA domain family protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4W927_CLOBI
AAA domain family protein {ECO:0000313|EMBL:EQK49591.1}; TaxID=1233170 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 19299.;"
AAA domain family protein
L1_008_000M1_scaffold_276_7
Anaerofustis stercorihominis, Anaerofustis, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2331..2870)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C907_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS72067.1}; TaxID=445971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Anaerofustis.;" source="Anaerofustis stercorihominis DSM 17244.;"
hypothetical protein
L1_008_000M1_scaffold_276_8
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3091..3696)
DNA (606bp) protein (202aa)
Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED n=1 Tax=Clostridium termitidis CT1112 RepID=S0FFV8_9CLOT
Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED {ECO:0000313|EMBL:EMS70010.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
hypothetical protein
L1_008_000M1_scaffold_276_9
Paenibacillus macerans, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3773..4567)
DNA (795bp) protein (265aa)
Esterase/lipase n=1 Tax=Sphaerochaeta pleomorpha (strain ATCC BAA-1885 / DSM 22778 / Grapes) RepID=G8QRV0_SPHPG
Phospholipase/Carboxylesterase family protein {ECO:0000313|EMBL:KFN11207.1}; TaxID=44252 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus macerans (Bacillus macerans).;"
esterase/lipase
L1_008_000M1_scaffold_276_10
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4898..5245
DNA (348bp) protein (116aa)
Nitroreductase n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D4K6_METSW
nitroreductase
Nitroreductase {ECO:0000313|EMBL:CDZ24567.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
L1_008_000M1_scaffold_276_11
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5602..7497)
DNA (1896bp) protein (632aa)
PTS system fructose-specific EIIABC component n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2DAF2_CLOS4
PTS system fructose-specific EIIABC component {ECO:0000313|EMBL:ERI99784.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
PTS system fructose subfamily transporter subunit IIC
L1_008_000M1_scaffold_276_12
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7618..9024)
DNA (1407bp) protein (469aa)
MATE efflux family protein n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2DSE6_CLOS4
MATE efflux family protein {ECO:0000313|EMBL:ERI99408.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
putative efflux protein, MATE family
L1_008_000M1_scaffold_276_13
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9407..9760)
DNA (354bp) protein (118aa)
Uncharacterized protein with conserved CXXC pairs n=5 Tax=Clostridiales RepID=D4MXB1_9FIRM
Uncharacterized protein with conserved CXXC pairs
Uncharacterized protein {ECO:0000313|EMBL:EFV16336.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
L1_008_000M1_scaffold_276_14
Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(9757..11031)
DNA (1275bp) protein (425aa)
Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Erysipelotrichaceae bacterium 3_1_53 RepID=E2SMP9_9FIRM
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:EFP61329.1}; TaxID=658659 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 3_1_53.;"
Thioredoxin reductase
L1_008_000M1_scaffold_276_15
Anaerostipes caccae, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11028..12467)
DNA (1440bp) protein (480aa)
FAD dependent oxidoreductase n=3 Tax=Anaerostipes RepID=B0MGL3_9FIRM
FAD dependent oxidoreductase {ECO:0000313|EMBL:EDR96700.1}; TaxID=411490 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes caccae DSM 14662.;"
Predicted dehydrogenase
L1_008_000M1_scaffold_276_16
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12797..13357)
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6JLM6_9CLOT
Glycerol-3-phosphate responsive antiterminator GlpP {ECO:0000313|EMBL:ENZ15505.1}; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
Glycerol-3-phosphate responsive antiterminator (mRNA-binding)
L1_008_000M1_scaffold_276_17
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

13604..15352
DNA (1749bp) protein (583aa)
ABC transporter, ATP-binding protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y8P5_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEF67670.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
ABC transporter-like protein
L1_008_000M1_scaffold_276_18
unknown

Not on your lists

comp(15539..15973)
DNA (435bp) protein (145aa)

This feature has no annotations

L1_008_000M1_scaffold_276_19
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15990..17078)
DNA (1089bp) protein (363aa)
Cysteine synthase A {ECO:0000313|EMBL:EET60955.1}; EC=2.5.1.47 {ECO:0000313|EMBL:EET60955.1};; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
Cysteine synthase A n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LEH1_9FIRM
cysteine synthase
L1_008_000M1_scaffold_276_20
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17310..17522
DNA (213bp) protein (71aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYE3_9FIRM
FeoA family protein {ECO:0000313|EMBL:KJF41460.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
feoA; ferrous iron transport protein A
L1_008_000M1_scaffold_276_21
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17634..17855
DNA (222bp) protein (74aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYE2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL64855.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Fe2+ transport system protein A
L1_008_000M1_scaffold_276_22
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17939..20116
DNA (2178bp) protein (726aa)
Ferrous iron transport protein B n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2DR68_CLOS4
Ferrous iron transport protein B {ECO:0000313|EMBL:ERI98983.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
feoB; ferrous iron transport protein B
L1_008_000M1_scaffold_276_23
unknown

Not on your lists

20144..20341
DNA (198bp) protein (66aa)

This feature has no annotations

L1_008_000M1_scaffold_276_24
Desulfosporosinus orientis, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20522..22159)
DNA (1638bp) protein (546aa)
Ig-like domain-containing surface protein n=1 Tax=Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 / VKM B-1628) RepID=G7W942_DESOD
Ig-like domain-containing surface protein
Ig-like domain-containing surface protein {ECO:0000313|EMBL:AET68683.1}; Flags: Precursor;; TaxID=768706 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 /; VKM B-1628) (Desulfotomaculum orientis).;"
L1_008_000M1_scaffold_276_25
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(22350..22691)
DNA (342bp) protein (114aa)
50S ribosomal protein L17 n=2 Tax=Ruminococcus RepID=D4L6C5_9FIRM
LSU ribosomal protein L17P
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_008_000M1_scaffold_276_26
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22724..23683)
DNA (960bp) protein (320aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=1 Tax=Clostridium sporosphaeroides RepID=UPI000370EE3E
L1_008_000M1_scaffold_276_27
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(23794..24390)
DNA (597bp) protein (199aa)
30S ribosomal protein S4 n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8VXP1_9CLOT
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
SSU ribosomal protein S4P
L1_008_000M1_scaffold_276_28
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists


comp(24410..24817)
DNA (408bp) protein (136aa)
30S ribosomal protein S11 n=2 Tax=Firmicutes RepID=R6YSK6_9FIRM
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
SSU ribosomal protein S11P
L1_008_000M1_scaffold_276_29
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(24834..25202)
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=1 Tax=Clostridium sporosphaeroides RepID=UPI000361FDA8
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
SSU ribosomal protein S13P
L1_008_000M1_scaffold_276_30
Selenomonas infelix, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(25236..25397)
DNA (162bp) protein (54aa)
50S ribosomal protein L36 (Fragment) n=1 Tax=Selenomonas infelix ATCC 43532 RepID=G5GQC8_9FIRM
50S ribosomal protein L36 {ECO:0000256|RuleBase:RU000571}; Flags: Fragment;; TaxID=679201 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas infelix ATCC 43532.;"
50S ribosomal protein L36
Displaying items 1-30 of 81 in total

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