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L1_008_000M1_scaffold_377

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_377_1
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(330..1115)
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K7R5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN41365.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
PHP domain-containing protein
L1_008_000M1_scaffold_377_2
Roseburia sp. CAG:100, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1125..2012)
DNA (888bp) protein (296aa)
ABC transporter permease protein n=1 Tax=Roseburia sp. CAG:100 RepID=R7R9W2_9FIRM
ABC transporter permease protein {ECO:0000313|EMBL:CDF46868.1}; TaxID=1262940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:100.;"
ABC transporter permease
L1_008_000M1_scaffold_377_3
Roseburia sp. CAG:100, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2025..2879)
DNA (855bp) protein (285aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Roseburia sp. CAG:100 RepID=R7R7Z6_9FIRM
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:CDF46869.1}; TaxID=1262940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:100.;"
ABC-type polysaccharide transport system, permease component
L1_008_000M1_scaffold_377_4
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3000..4706)
DNA (1707bp) protein (569aa)
ABC transporter, solute-binding protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2AZR2_9CLOT
ABC transporter, solute-binding protein {ECO:0000313|EMBL:ERI71359.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
sugar ABC transporter substrate-binding protein
L1_008_000M1_scaffold_377_5
Firmicutes bacterium CAG:24, Firmicutes, Bacteria

Not on your lists

comp(4729..5619)
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:24 RepID=R5GZM7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY22855.1}; TaxID=1263012 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:24.;"
metal-dependent hydrolase, beta-lactamase superfamily III
L1_008_000M1_scaffold_377_6
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5801..7198)
DNA (1398bp) protein (466aa)
Response regulator receiver domain protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2BGN4_9CLOT
Response regulator receiver domain protein {ECO:0000313|EMBL:ERI71360.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
AraC family transcriptional regulator
L1_008_000M1_scaffold_377_7
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7253..8917)
DNA (1665bp) protein (555aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VRB6_CLOSH
integral membrane sensor signal transduction histidine kinase
L1_008_000M1_scaffold_377_8
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

comp(9008..9622)
DNA (615bp) protein (205aa)
ADP-ribose pyrophosphatase (EC:3.6.1.13)
Hydrolase NUDIX family n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6Y763_9FIRM
Hydrolase NUDIX family {ECO:0000313|EMBL:CDD29720.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
L1_008_000M1_scaffold_377_9
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10264..10467
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A5Z6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX38323.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
hypothetical protein
L1_008_000M1_scaffold_377_10
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10773..11561
DNA (789bp) protein (263aa)
PHP family phosphohydrolase, histidinol phosphatase n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LY74_CLOCD
PHP family phosphohydrolase, histidinol phosphatase
PHP family phosphohydrolase, histidinol phosphatase {ECO:0000313|EMBL:AEV67805.1}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
L1_008_000M1_scaffold_377_11
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11686..12741
DNA (1056bp) protein (352aa)
Transcriptional regulator n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VIG1_CLOSH
transcriptional regulator
Two component transcriptional regulator, AraC family {ECO:0000313|EMBL:AGC67845.1}; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
L1_008_000M1_scaffold_377_12
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12781..14631)
DNA (1851bp) protein (617aa)
Sensor protein LytS {ECO:0000313|EMBL:AGC67844.1}; EC=2.7.13.3 {ECO:0000313|EMBL:AGC67844.1};; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
Sensor protein LytS n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VMG9_CLOSH
signal transduction protein
L1_008_000M1_scaffold_377_13
Paenibacillus sp. FSL H8-237, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14895..15845
DNA (951bp) protein (317aa)
ABC transporter permease subunit n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VQJ7_CLOSH
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ETT47472.1}; TaxID=1227350 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL H8-237.;"
protein lplB
L1_008_000M1_scaffold_377_14
Paenibacillus dendritiformis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15857..16729
DNA (873bp) protein (291aa)
Binding-protein-dependent transport system inner membrane protein n=1 Tax=Paenibacillus dendritiformis C454 RepID=H3SIE8_9BACL
Binding-protein-dependent transport system inner membrane protein {ECO:0000313|EMBL:EHQ61151.1}; TaxID=1131935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus dendritiformis C454.;"
ABC transporter permease subunit
L1_008_000M1_scaffold_377_15
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16747..18399
DNA (1653bp) protein (551aa)
ABC transporter periplasmic subunit n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VMZ4_CLOSH
ABC transporter periplasmic subunit
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:AGC67841.1}; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
L1_008_000M1_scaffold_377_16
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18468..19340
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6D2F9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA78156.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
L1_008_000M1_scaffold_377_17
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19603..19944)
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6R6Q1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC40999.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
hypothetical protein
L1_008_000M1_scaffold_377_18
Parabacteroides sp. CAG:409, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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21417..22265
DNA (849bp) protein (283aa)
Putative pantothenate kinase n=1 Tax=Parabacteroides sp. CAG:409 RepID=R7JB54_9PORP
Putative pantothenate kinase {ECO:0000313|EMBL:CDE61085.1}; TaxID=1262913 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides sp. CAG:409.;"
pantothenate kinase
L1_008_000M1_scaffold_377_19
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22454..23998)
DNA (1545bp) protein (515aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6CN53_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA78128.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
permease
L1_008_000M1_scaffold_377_20
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

24582..26492
DNA (1911bp) protein (637aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
threonyl-tRNA synthetase/Ser-tRNA(Thr) hydrolase (EC:3.1.1.- 6.1.1.3)
Threonine--tRNA ligase n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6YPS8_9FIRM
L1_008_000M1_scaffold_377_21
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26760..28376)
DNA (1617bp) protein (539aa)
Glycosyl hydrolase, family 43 n=1 Tax=Clostridium leptum DSM 753 RepID=A7VRA9_9CLOT
Glycosyl hydrolase, family 43 {ECO:0000313|EMBL:EDO62231.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
hypothetical protein
L1_008_000M1_scaffold_377_22
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28578..30200)
DNA (1623bp) protein (541aa)
ABC transporter, substrate-binding protein, family 5 n=1 Tax=Clostridium sp. MSTE9 RepID=J0N479_9CLOT
ABC transporter, substrate-binding protein, family 5 {ECO:0000313|EMBL:EJF41604.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
ABC-type oligopeptide transport system, periplasmic component
L1_008_000M1_scaffold_377_23
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

Not on your lists

30726..31106
DNA (381bp) protein (127aa)
desulfoferrodoxin ferrous iron-binding domain (EC:1.15.1.2)
hypothetical protein n=1 Tax=Zymophilus raffinosivorans RepID=UPI00037FF34F
Desulfoferrodoxin {ECO:0000313|EMBL:CDA90917.1}; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
L1_008_000M1_scaffold_377_24
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(31447..32961)
DNA (1515bp) protein (505aa)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058362}; Short=BPG-independent PGAM {ECO:0000256|HAMAP-Rule:MF_01038};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01038};; Short=iPGM {ECO:0000256|HAMAP-Rule:MF_01038};; EC=5.4.2.12 {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058367};; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
phosphoglycerate mutase (EC:5.4.2.1)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=1 Tax=Clostridium leptum CAG:27 RepID=R6MZT3_9CLOT
L1_008_000M1_scaffold_377_25
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33068..33835)
DNA (768bp) protein (256aa)
tpiA; Triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
Triosephosphate isomerase n=2 Tax=Clostridium RepID=A7VRE5_9CLOT
L1_008_000M1_scaffold_377_26
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33929..35122)
DNA (1194bp) protein (398aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
pgk; Phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase n=2 Tax=Clostridium RepID=A7VRE4_9CLOT
L1_008_000M1_scaffold_377_27
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35414..36751
DNA (1338bp) protein (446aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A7A6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX37754.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
Recombination protein MgsA
L1_008_000M1_scaffold_377_28
Desulfosporosinus orientis, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36889..41628)
DNA (4740bp) protein (1580aa)
Ig-like domain-containing surface protein n=1 Tax=Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 / VKM B-1628) RepID=G7W942_DESOD
Ig-like domain-containing surface protein
Ig-like domain-containing surface protein {ECO:0000313|EMBL:AET68683.1}; Flags: Precursor;; TaxID=768706 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 /; VKM B-1628) (Desulfotomaculum orientis).;"
L1_008_000M1_scaffold_377_29
unknown

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comp(41651..42700)
DNA (1050bp) protein (350aa)

This feature has no annotations

L1_008_000M1_scaffold_377_30
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(42943..43794)
DNA (852bp) protein (284aa)
EDD domain protein DegV family n=1 Tax=Clostridium sp. CAG:352 RepID=R6R295_9CLOT
EDD domain protein DegV family {ECO:0000313|EMBL:CDC39319.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
hypothetical protein
Displaying items 1-30 of 40 in total

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