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L1_008_000M1_scaffold_478

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_478_1
unknown

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comp(155..361)
DNA (207bp) protein (69aa)

This feature has no annotations

L1_008_000M1_scaffold_478_2
Scedosporium apiospermum, Scedosporium, Microascales, Hypocreomycetidae, Ascomycota, Fungi

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comp(354..1769)
DNA (1416bp) protein (472aa)
Uncharacterized protein n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0G0C5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KEZ42562.1}; TaxID=563466 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Microascales; Microascaceae; Scedosporium.;" source="Scedosporium apiospermum.;"
hypothetical protein
L1_008_000M1_scaffold_478_3
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

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1911..3347
DNA (1437bp) protein (479aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01571}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01571};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01571}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
prolyl-tRNA synthetase (EC:6.1.1.15)
Proline--tRNA ligase n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5EZZ1_9FIRM
L1_008_000M1_scaffold_478_4
[Clostridium] straminisolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3347..3568
DNA (222bp) protein (74aa)
4-oxalocrotonate tautomerase n=7 Tax=Clostridium thermocellum RepID=A3DD58_CLOTH
4-oxalocrotonate tautomerase {ECO:0000313|EMBL:GAE90379.1}; TaxID=1294263 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] straminisolvens JCM 21531.;"
4-oxalocrotonate tautomerase
L1_008_000M1_scaffold_478_5
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3767..6490)
DNA (2724bp) protein (908aa)
putative xanthine dehydrogenase subunit D (XDHasesubunit D) (EC:1.17.1.4)
Putative selenium-dependent molybdenum hydroxylase 1 n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P0Z8_9FIRM
Putative selenium-dependent molybdenum hydroxylase 1 {ECO:0000313|EMBL:EDM98019.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
L1_008_000M1_scaffold_478_6
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6579..7742)
DNA (1164bp) protein (388aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. 7_3_54FAA RepID=G5FE76_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHF05283.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
mandelate racemase/muconate lactonizing protein
L1_008_000M1_scaffold_478_7
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7871..9316)
DNA (1446bp) protein (482aa)
Na+/H+ antiporter NhaC n=1 Tax=Peptoniphilus sp. BV3AC2 RepID=U7UYL9_9FIRM
Na /H antiporter {ECO:0000313|EMBL:CEP97593.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
MleN
L1_008_000M1_scaffold_478_8
Eubacterium sp. CAG:161, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9465..10175)
DNA (711bp) protein (237aa)
Amidases related to nicotinamidase n=1 Tax=Eubacterium sp. CAG:161 RepID=R5KZR7_9FIRM
Amidases related to nicotinamidase {ECO:0000313|EMBL:CCY70574.1}; TaxID=1262881 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:161.;"
isochorismatase hydrolase
L1_008_000M1_scaffold_478_9
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10181..10873)
DNA (693bp) protein (231aa)
Amidases related to nicotinamidase n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3THM4_TISMK
ywoC; Amidases related to nicotinamidase
Amidases related to nicotinamidase {ECO:0000313|EMBL:AFK52262.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
L1_008_000M1_scaffold_478_10
Pelosinus fermentans, Pelosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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11241..11780
DNA (540bp) protein (180aa)
Transcriptional regulator, MarR family n=6 Tax=Pelosinus RepID=I8S097_9FIRM
Regulatory protein MarR {ECO:0000313|EMBL:EIW15647.1}; TaxID=1149862 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Pelosinus.;" source="Pelosinus fermentans B4.;"
marR2; regulatory protein MarR
L1_008_000M1_scaffold_478_11
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11849..12976
DNA (1128bp) protein (376aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
alanine racemase (EC:5.1.1.1)
Alanine racemase n=3 Tax=Clostridium bolteae RepID=A8RKI1_9CLOT
L1_008_000M1_scaffold_478_12
BJP_IG2069_Clostridiales_48_15, Clostridiales, Clostridia, Firmicutes, Bacteria

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13082..14191
DNA (1110bp) protein (370aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:91 RepID=R6VSK5_9CLOT
hypothetical protein
Tax=BJP_IG2069_Clostridiales_48_15
L1_008_000M1_scaffold_478_13

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14434..14598
DNA (165bp) protein (55aa)
50S ribosomal protein L33 n=2 Tax=root RepID=R5AZW2_9FIRM
Ribosomal protein L33 {ECO:0000313|EMBL:EKC67467.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
rpmG; 50S ribosomal protein L33
L1_008_000M1_scaffold_478_14
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

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14626..14895
DNA (270bp) protein (90aa)
Protein translocase subunit SecE n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AVX3_9FIRM
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
secE; Preprotein translocase subunit SecE
L1_008_000M1_scaffold_478_15

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14901..15428
DNA (528bp) protein (176aa)
Transcription antitermination protein nusG n=1 Tax=human gut metagenome RepID=K1TMD1_9ZZZZ
Transcription antitermination protein nusG {ECO:0000313|EMBL:EKC67465.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
nusG; transcription antitermination protein NusG
L1_008_000M1_scaffold_478_16
Firmicutes bacterium CAG:555, Firmicutes, Bacteria

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15447..15872
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=1 Tax=Firmicutes bacterium CAG:555 RepID=R5CSM8_9FIRM
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1263030 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:555.;"
rplK; ribosomal protein L11
L1_008_000M1_scaffold_478_17
Firmicutes bacterium CAG:240, Firmicutes, Bacteria

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15932..16624
DNA (693bp) protein (231aa)
50S ribosomal protein L1 n=1 Tax=Firmicutes bacterium CAG:240 RepID=R6IA47_9FIRM
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1263013 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:240.;"
rplA; 50S ribosomal protein L1
L1_008_000M1_scaffold_478_18
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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16758..18173
DNA (1416bp) protein (472aa)
Trypsin n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IJ99_9FIRM
Trypsin {ECO:0000313|EMBL:CCY40394.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
peptidase S1 and S6 chymotrypsin/Hap
L1_008_000M1_scaffold_478_19
Clostridium scatologenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18235..18984)
DNA (750bp) protein (250aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R5TS00_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKA69103.1}; TaxID=1548 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium scatologenes.;"
L1_008_000M1_scaffold_478_20
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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19078..20115
DNA (1038bp) protein (346aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5CXJ3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX72590.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family
L1_008_000M1_scaffold_478_21
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

comp(20239..21366)
DNA (1128bp) protein (376aa)
Periplasmic binding protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5ICU8_9FIRM
Periplasmic binding protein {ECO:0000313|EMBL:CCY39918.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
periplasmic binding protein
L1_008_000M1_scaffold_478_22
BJP_IG2157_Clostridiales_52_13, Dethiosulfatibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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21516..22070
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF502 RepID=N2ANI4_9CLOT
ribonuclease
Tax=BJP_IG2157_Clostridiales_52_13
L1_008_000M1_scaffold_478_23
unknown

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22180..22512
DNA (333bp) protein (111aa)

This feature has no annotations

L1_008_000M1_scaffold_478_24

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22505..23173
DNA (669bp) protein (223aa)
atpB; ATP synthase F0 complex subunit alpha (EC:3.6.3.14)
ATP synthase F0, A subunit n=1 Tax=human gut metagenome RepID=K1UD82_9ZZZZ
ATP synthase F0, A subunit {ECO:0000313|EMBL:EKC76205.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_008_000M1_scaffold_478_25
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

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23232..23462
DNA (231bp) protein (77aa)
atpC; ATP synthase F0 complex subunit gamma (EC:3.6.3.14)
ATP synthase subunit c n=2 Tax=root RepID=R5AVZ1_9FIRM
ATP synthase F0 subunit C {ECO:0000313|EMBL:KJS20239.1}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
L1_008_000M1_scaffold_478_26
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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23476..24006
DNA (531bp) protein (177aa)
atpF; ATP synthase FO, subunit B (EC:3.6.3.14)
ATP synthase subunit b n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T8U0_9FIRM
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
L1_008_000M1_scaffold_478_27
Firmicutes bacterium CAG:555, Firmicutes, Bacteria

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24009..26207
DNA (2199bp) protein (733aa)
ATP synthase F1 subunit alpha (EC:3.6.3.14)
ATP synthase subunit alpha n=1 Tax=Firmicutes bacterium CAG:555 RepID=R5D897_9FIRM
ATP synthase subunit alpha {ECO:0000313|EMBL:CCX72086.1}; TaxID=1263030 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:555.;"
L1_008_000M1_scaffold_478_28
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

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26207..27040
DNA (834bp) protein (278aa)
atpG; ATP synthase gamma chain (EC:3.6.3.14)
ATP synthase gamma chain n=2 Tax=root RepID=R5B1H5_9FIRM
ATP synthase gamma chain {ECO:0000256|HAMAP-Rule:MF_00815}; ATP synthase F1 sector gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; F-ATPase gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
L1_008_000M1_scaffold_478_29
Firmicutes bacterium CAG:240, Firmicutes, Bacteria

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27044..28435
DNA (1392bp) protein (464aa)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; TaxID=1263013 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:240.;"
ATP synthase subunit beta n=1 Tax=Firmicutes bacterium CAG:240 RepID=R6IC66_9FIRM
ATP synthase subunit beta
L1_008_000M1_scaffold_478_30
unknown

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28453..28788
DNA (336bp) protein (112aa)

This feature has no annotations

Displaying items 1-30 of 46 in total

View Taxonomy