ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

L1_008_000M1_scaffold_880_13

Organism: dasL1_008_000M1_concoct_10_sub_fa

near complete RP 46 / 55 MC: 8 BSCG 50 / 51 MC: 7 ASCG 14 / 38 MC: 3
Location: 11211..13508

Top 3 Functional Annotations

Value Algorithm Source
Carbamoyltransferase HypF n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPE4_9FIRM similarity UNIREF
DB: UNIREF100
  • Identity: 62.7
  • Coverage: 636.0
  • Bit_score: 809
  • Evalue 1.80e-231
Carbamoyltransferase HypF {ECO:0000313|EMBL:EFB75405.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 62.7
  • Coverage: 636.0
  • Bit_score: 809
  • Evalue 2.50e-231
hypF; hydrogenase maturation protein HypF similarity KEGG
DB: KEGG
  • Identity: 46.3
  • Coverage: 766.0
  • Bit_score: 644
  • Evalue 2.80e-182

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Subdoligranulum variabile → Subdoligranulum → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 2298
ATGAGCCGCACGGAACAAATTCGTCTTGTTGTCTCCGGCGTGGTACAGGGCGTCGGTATGCGTCCTTTTCTGCACCGGCTGGCCAACCGTCTCTCCCTGACCGGCTGGGTGCGCAATACGGCCTTCGGCGTCGAGCTTGAGCTCGAAGGTGCGCCGGAGGCCTTGCGTGCGTTTGAGGAAACACTGCGCGTTTCACCGCCGCCGCTCGCCGTAGTCGAGAAAATCACGCGCGAGCCTCTCAAGGATCCGCTGGGGGTTTCCTCGTTCTCCATCCTGCCGAGTGAATCGGGATCTGGCGCGACGCTCATCTCGCCGGATCTTGCCCCATGCAGCGCCTGTCTCGCAGAGCTTGCCGATCCCACGGATCGGCGTTACCGCTACCCGTTCCTCAACTGCACCGACTGCGGGCCGCGTTTCTCAATTCTGCGCGACATTCCATATGATCGGGCGAATACGTCGATGGCTTCCTTTTCCATGTGTGCCGACTGCGCAGAGGAATATGGGGACCTGCGCTCCCGGCGCTACCACGCGCAGCCGGACTGCTGTCCCGTCTGCGGGCCGCGGGCATACTTCTGCACGGAAGACGGGCGGGAACTTCCGGGCGATCCCATTGCTCTCGCCCAGCAAGCGCTCGCCCGGGGGGAAATTGTTGCGGTGAAGGGAAGCGGCGGAATACACCTCGCGTGCGATGCACGAAACCACACAGCCGTCGTGCGGCTGCGCAAGCGCAAGGGCCGCGAGGCAAAGCCGCTCGCCGTGATGTGCCGTCATACGGATGCGGCGCGCATGTTCTGTACTGTATCGACGGAAGAGGCCGCGCTGCTCGAAAGCCCGCGCCGGCCGATTGTCCTGCTCGAAAAGCGCTGTCCTGACGCATTTTCGGAGCTGAGCGAAAACACACGTCTCGGTGTGCTTCTCCCCTATACGCCCCTTCATACGCTTCTCCTCGACGGCTCTTTCGGAGGACCCGACGCGCTCGTTATGACGAGCGCAAACCACTCCGACGATCCCGTTCTGATCGACGAGGCGGAAGCTCTCGAAGCACTCTCCGGAATCGCCGACGGCTTTCTCCTGCACAACAGGCCGATTGTCAACCGGTGCGACGACTCTCTTCTCATGCTTTGGCGCGGCGCTCCCGTCTTTTTCCGCCGGAGCCGCGGATGGGCTCCGCAGCCCATTTTGCTGTCCTTCGACGCAACAGGCGCCGCAGCGTTCGGCGCGGAGCAAAAAGCCTCCTTCTGTCTTGGCCGGGGACGTCATGCTTTCCCAAGCCAGCACATCGGCGATTTGAAAAGCGCTGCTGTGCTCGACCATTATCGTACCGCCTTCAACACGTACCTGCGTCTTTTCCGCATCACCCCCGCTGTTCTCGCCTGTGACCTGCATCCGGACTTTTTTTCCACTCGGGAAGCGGAAGATATGGCAAAAAGGTTCTCCCTCCCGCTTGTGCGTGTGCAGCATCACTGGGCGCACCTGTCCTCCTGCCTCGCGGATAATGCGGCGGACGGTCCGGCCTTCGGAATTGTCTGGGACGGAACAGGACTTGGAACAGACGGGACCGTATGGGGAGGGGAATTCCTGCGCGGCAGCTTCAAGGGCTTCACGCGTTTGGGCAGTATTCGCCCCATTCTGCTGCCGGGCGGAGACGCGGCCACACACGAAATCGGGCGTGTGGCTCTTTCTCTTCTGTGGGATGCGGGACTTCCGGTAAGCAATGCACCGCTTCCAGATGTAAAGCGTATATCCATTACAGCTATGCTTGACAAGGAAATTGCCTGTACACCCGCAAGCAGCATTGGCAGGCTGTTTGACGGCATTTACGCCCTGCTGACGGGCGTTTCCTTCGTCTCCTATGAAGGAGAAGGCGCCATCCGGCTTGAGGCAATGCTGCGTCCCGGCCTCGCAGGAAGAACATACCCGCTTGCCTTCTACGAGGAAAACGGTGTGCGCTGCTTTGACTTTCGTCCGCTGGTGCGTGCCATTGTCCGCGACCGGGACAACGGCATCCCGCTTTCCGCCATTGCCCGGGGCTTTCACGACGCTCTGTGTGAAATGGCGCTTGACCAGTGTCAAACTCTCAACCGTGAGCGCCTTCCCGCCGCGCTGAGCGGCGGCGTCTTTCTTAACCGCACGCTGCTCGACGGCGTCTCAGATCGCCTCACTGCGGCCGGGTATCGCGTGCTAACACACCGCCGCGTTTCGCCGGGTGACGAGGGGCTGTCTCTCGGACAGCTCGCCATCGCGGCGTGTCAAATGAACCAAAGGAGAAACGATCATGTGTCTGGCTGTTCCGCTTAA
PROTEIN sequence
Length: 766
MSRTEQIRLVVSGVVQGVGMRPFLHRLANRLSLTGWVRNTAFGVELELEGAPEALRAFEETLRVSPPPLAVVEKITREPLKDPLGVSSFSILPSESGSGATLISPDLAPCSACLAELADPTDRRYRYPFLNCTDCGPRFSILRDIPYDRANTSMASFSMCADCAEEYGDLRSRRYHAQPDCCPVCGPRAYFCTEDGRELPGDPIALAQQALARGEIVAVKGSGGIHLACDARNHTAVVRLRKRKGREAKPLAVMCRHTDAARMFCTVSTEEAALLESPRRPIVLLEKRCPDAFSELSENTRLGVLLPYTPLHTLLLDGSFGGPDALVMTSANHSDDPVLIDEAEALEALSGIADGFLLHNRPIVNRCDDSLLMLWRGAPVFFRRSRGWAPQPILLSFDATGAAAFGAEQKASFCLGRGRHAFPSQHIGDLKSAAVLDHYRTAFNTYLRLFRITPAVLACDLHPDFFSTREAEDMAKRFSLPLVRVQHHWAHLSSCLADNAADGPAFGIVWDGTGLGTDGTVWGGEFLRGSFKGFTRLGSIRPILLPGGDAATHEIGRVALSLLWDAGLPVSNAPLPDVKRISITAMLDKEIACTPASSIGRLFDGIYALLTGVSFVSYEGEGAIRLEAMLRPGLAGRTYPLAFYEENGVRCFDFRPLVRAIVRDRDNGIPLSAIARGFHDALCEMALDQCQTLNRERLPAALSGGVFLNRTLLDGVSDRLTAAGYRVLTHRRVSPGDEGLSLGQLAIAACQMNQRRNDHVSGCSA*