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L1_008_000M1_scaffold_880

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_880_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(340..1638)
DNA (1299bp) protein (433aa)
M18 family aminopeptidase {ECO:0000256|RuleBase:RU004387}; EC=3.4.11.- {ECO:0000256|RuleBase:RU004387};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Aspartyl aminopeptidase (EC:3.4.11.-)
M18 family aminopeptidase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQI3_9FIRM
L1_008_000M1_scaffold_880_2
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1892..3304
DNA (1413bp) protein (471aa)
MATE efflux family protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2CWB0_9CLOT
MATE efflux family protein {ECO:0000313|EMBL:ERI71566.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
matE7; Na+ driven multidrug efflux pump
L1_008_000M1_scaffold_880_3
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3307..4050
DNA (744bp) protein (248aa)
Protein TraX n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LE90_9FIRM
Protein TraX {ECO:0000313|EMBL:EET60873.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
hypothetical protein
L1_008_000M1_scaffold_880_4
Butyrivibrio proteoclasticus, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4254..4568)
DNA (315bp) protein (105aa)
rhaU; L-rhamnose 1-epimerase (EC:5.1.3.-)
L-rhamnose mutarotase {ECO:0000256|SAAS:SAAS00048862}; EC=5.1.3.32 {ECO:0000256|SAAS:SAAS00169483};; TaxID=515622 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio.;" source="Butyrivibrio proteoclasticus (strain ATCC 51982 / DSM 14932 / B316); (Clostridium proteoclasticum).;"
L-rhamnose mutarotase n=1 Tax=Butyrivibrio sp. AE3009 RepID=UPI0003B3D610
L1_008_000M1_scaffold_880_5
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4594..5193)
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:217 RepID=R6JN08_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB51437.1}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)
L1_008_000M1_scaffold_880_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5199..6278)
DNA (1080bp) protein (360aa)
ech hydrogenase subunit E (EC:1.6.5.3)
Respiratory-chain NADH dehydrogenase, 49 Kd subunit n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPD9_9FIRM
Respiratory-chain NADH dehydrogenase, 49 Kd subunit {ECO:0000313|EMBL:EFB75401.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_008_000M1_scaffold_880_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6285..6632)
DNA (348bp) protein (116aa)
Respiratory-chain NADH dehydrogenase, 30 Kd subunit n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPE0_9FIRM
Respiratory-chain NADH dehydrogenase, 30 Kd subunit {ECO:0000313|EMBL:EFB75402.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Respiratory-chain NADH dehydrogenase, 30 Kd subunit.
L1_008_000M1_scaffold_880_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6616..7095)
DNA (480bp) protein (160aa)
NADH ubiquinone oxidoreductase, 20 Kd subunit n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPE1_9FIRM
NADH ubiquinone oxidoreductase, 20 Kd subunit {ECO:0000313|EMBL:EFB75403.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ech hydrogenase subunit C
L1_008_000M1_scaffold_880_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7109..7972)
DNA (864bp) protein (288aa)
NADH dehydrogenase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPE2_9FIRM
NADH dehydrogenase {ECO:0000313|EMBL:EFB75404.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
echB; NADH dehydrogenase
L1_008_000M1_scaffold_880_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7969..9861)
DNA (1893bp) protein (631aa)
NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit (EC:1.6.99.5)
NADH-ubiquinone/plastoquinone (Complex I) family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPE3_9FIRM
NADH-ubiquinone/plastoquinone (Complex I) family protein {ECO:0000313|EMBL:EFB75406.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_008_000M1_scaffold_880_11
Firmicutes bacterium CAG:308, Firmicutes, Bacteria

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10213..10554
DNA (342bp) protein (114aa)
Zn finger protein HypA/HybF (Possibly regulating hydrogenase expression) n=3 Tax=Firmicutes RepID=D4JFN6_9FIRM
Zn finger protein HypA/HybF (possibly regulating hydrogenase expression)
Zn finger protein HypA/HybF (Possibly regulating hydrogenase expression) {ECO:0000313|EMBL:CDD49613.1}; TaxID=1263016 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:308.;"
L1_008_000M1_scaffold_880_12
Faecalitalea cylindroides, Faecalitalea, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

10558..11214
DNA (657bp) protein (219aa)
hydantoin utilization protein A n=1 Tax=[Streptococcus] pleomorphus RepID=UPI0003B49407
hydrogenase accessory protein HypB
Hydrogenase accessory protein HypB {ECO:0000313|EMBL:CBK89009.1}; TaxID=717960 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Faecalitalea.;" source="Faecalitalea cylindroides T2-87.;"
L1_008_000M1_scaffold_880_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11211..13508
DNA (2298bp) protein (766aa)
Carbamoyltransferase HypF n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPE4_9FIRM
Carbamoyltransferase HypF {ECO:0000313|EMBL:EFB75405.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypF; hydrogenase maturation protein HypF
L1_008_000M1_scaffold_880_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13486..13704
DNA (219bp) protein (73aa)
Hydrogenase assembly chaperone HypC/HupF n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPE5_9FIRM
Hydrogenase assembly chaperone HypC/HupF {ECO:0000313|EMBL:EFB75407.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hydrogenase assembly chaperone HypC
L1_008_000M1_scaffold_880_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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13694..14791
DNA (1098bp) protein (366aa)
Hydrogenase expression/formation protein HypD n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPE6_9FIRM
Hydrogenase expression/formation protein HypD {ECO:0000313|EMBL:EFB75408.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hydrogenase expression/formation protein HypD
L1_008_000M1_scaffold_880_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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14805..15806
DNA (1002bp) protein (334aa)
Hydrogenase expression/formation protein HypE n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPE7_9FIRM
Hydrogenase expression/formation protein HypE {ECO:0000313|EMBL:EFB75409.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hydrogenase maturation factor-like protein
L1_008_000M1_scaffold_880_17
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16014..17315)
DNA (1302bp) protein (434aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M1H1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS64894.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
hypothetical protein
L1_008_000M1_scaffold_880_18
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17312..17635)
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6UDL0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC68887.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
putative PadR family transcriptional regulator
L1_008_000M1_scaffold_880_19
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17943..18587)
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=T5RUS4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EQN60307.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L1_008_000M1_scaffold_880_20
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18830..20431
DNA (1602bp) protein (534aa)
Sodium/hydrogen exchanger n=1 Tax=Roseburia sp. CAG:45 RepID=R6NIP8_9FIRM
Sodium/hydrogen exchanger {ECO:0000313|EMBL:CDC11030.1}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
sodium/hydrogen exchanger
L1_008_000M1_scaffold_880_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20776..21225)
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQK7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB74987.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_008_000M1_scaffold_880_22
unknown

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comp(21247..21756)
DNA (510bp) protein (170aa)

This feature has no annotations

L1_008_000M1_scaffold_880_23
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22141..22932)
DNA (792bp) protein (264aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
putative peptidyl-prolyl cis-trans isomerase (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Clostridium leptum DSM 753 RepID=A7VWH4_9CLOT
L1_008_000M1_scaffold_880_24
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23103..24062
DNA (960bp) protein (320aa)
S1 RNA binding domain protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0N7C5_9CLOT
S1 RNA binding domain protein {ECO:0000313|EMBL:EJF40402.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
RNA binding S1 domain-containing protein
L1_008_000M1_scaffold_880_25
Eubacterium plexicaudatum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24714..24878)
DNA (165bp) protein (55aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Eubacterium plexicaudatum ASF492 RepID=N2BJS8_9FIRM
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EMZ37079.1}; TaxID=1235802 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium plexicaudatum ASF492.;"
sigW; RNA polymerase ECF-type sigma factor
L1_008_000M1_scaffold_880_26
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25059..25757)
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Clostridium sp. MSTE9 RepID=J1H5C8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EJF40463.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
L1_008_000M1_scaffold_880_27
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25762..26802)
DNA (1041bp) protein (347aa)
Protein-arginine kinase {ECO:0000256|HAMAP-Rule:MF_00602, ECO:0000256|SAAS:SAAS00166216}; EC=2.7.14.1 {ECO:0000256|HAMAP-Rule:MF_00602, ECO:0000256|SAAS:SAAS00166206};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
Arginine kinase (EC:2.7.3.3)
ATP:guanido phosphotransferase n=1 Tax=Clostridium sporosphaeroides RepID=UPI00035DCFC3
L1_008_000M1_scaffold_880_28
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

comp(26795..27274)
DNA (480bp) protein (160aa)
UvrB/UvrC domain protein n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6ZL61_9FIRM
UvrB/UvrC domain protein {ECO:0000313|EMBL:CDD31187.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
Uncharacterized protein with conserved CXXC pairs
L1_008_000M1_scaffold_880_29
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

Not on your lists

27488..27637
DNA (150bp) protein (50aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5SGW9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ45991.1}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
hypothetical protein
L1_008_000M1_scaffold_880_30
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27771..28022)
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BAE4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA61148.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
hypothetical protein
Displaying items 1-30 of 35 in total

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