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L1_008_000M1_scaffold_34

Search features with annotation key words

Displaying items 1-30 of 160 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_34_1
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(465..1622)
-----------------
DNA (1158bp)
protein (386aa)
Uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ED82_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI73233.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
L1_008_000M1_scaffold_34_2
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(2600..3097)
-----------------
DNA (498bp)
protein (166aa)
Death-on-curing family protein n=1 Tax=Bifidobacterium angulatum DSM 20098 = JCM 7096 RepID=C4FFP3_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:KGI73251.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
putative death-on-curing family protein
L1_008_000M1_scaffold_34_3
Bifidobacterium callitrichos, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3097..3630)
-----------------
DNA (534bp)
protein (178aa)
Uncharacterized protein n=1 Tax=Scardovia wiggsiae F0424 RepID=J0WZU9_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:KFI54685.1}; TaxID=1437609 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium callitrichos DSM 23973.;"
putative phage-associated protein
L1_008_000M1_scaffold_34_4
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(3876..4979)
-----------------
DNA (1104bp)
protein (368aa)
Uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ED76_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI73245.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
L1_008_000M1_scaffold_34_5
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5276..5824)
-----------------
DNA (549bp)
protein (183aa)
Uncharacterized protein n=1 Tax=Parabacteroides distasonis CL09T03C24 RepID=K6AYF1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN28635.1}; TaxID=999417 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis CL09T03C24.;"
MTH538 TIR-like domain (DUF1863).
L1_008_000M1_scaffold_34_6
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(5778..6728)
-----------------
DNA (951bp)
protein (317aa)
Uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G8N4_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EEA91362.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
hypothetical protein
L1_008_000M1_scaffold_34_7
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6969..7796)
-----------------
DNA (828bp)
protein (276aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. CAG:702 RepID=R5U4P5_9BACE
Uncharacterised protein {ECO:0000313|EMBL:CEO33231.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
hypothetical protein
L1_008_000M1_scaffold_34_8
Bifidobacterium stercoris, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8039..9343
-----------------
DNA (1305bp)
protein (435aa)
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0003055761
Putative Transglutaminase-like superfamily {ECO:0000313|EMBL:KFI94808.1}; Flags: Fragment;; TaxID=592977 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium stercoris.;"
Listeria/Bacterioides repeat
L1_008_000M1_scaffold_34_9
Eggerthella sp. YY7918, Eggerthella, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

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9340..9924
-----------------
DNA (585bp)
protein (195aa)
Subtilisin-like serine protease n=1 Tax=Eggerthella sp. (strain YY7918) RepID=F7V004_EEGSY
AprE; subtilisin-like serine protease
Subtilisin-like serine protease {ECO:0000313|EMBL:BAK44097.1}; TaxID=502558 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella.;" source="Eggerthella sp. (strain YY7918).;"
L1_008_000M1_scaffold_34_10
Exiguobacterium sp. RIT341, Exiguobacterium, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9997..11316)
-----------------
DNA (1320bp)
protein (440aa)
Polysaccharide biosynthesis protein n=1 Tax=Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228) RepID=E1R9Z8_SPISS
Inner membrane protein YghQ {ECO:0000313|EMBL:EZP59692.1}; TaxID=1470592 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillales Family XII. Incertae Sedis; Exiguobacterium.;" source="Exiguobacterium sp. RIT341.;"
polysaccharide biosynthesis protein
L1_008_000M1_scaffold_34_11
unknown

Not on your lists

comp(11316..12515)
-----------------
DNA (1200bp)
protein (400aa)

This feature has no annotations

L1_008_000M1_scaffold_34_12
Saccharicrinis fermentans, Saccharicrinis, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12512..13645)
-----------------
DNA (1134bp)
protein (378aa)
Putative uncharacterized protein n=1 Tax=Odoribacter laneus YIT 12061 RepID=H1DCP8_9PORP
Uncharacterized protein {ECO:0000313|EMBL:GAF03252.1}; TaxID=869213 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Saccharicrinis.;" source="Saccharicrinis fermentans DSM 9555 = JCM 21142.;"
hypothetical protein
L1_008_000M1_scaffold_34_13
Slackia heliotrinireducens, Slackia, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(13655..14662)
-----------------
DNA (1008bp)
protein (336aa)
Putative uncharacterized protein n=1 Tax=Slackia heliotrinireducens (strain ATCC 29202 / DSM 20476 / NCTC 11029 / RHS 1) RepID=C7N5S7_SLAHD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV22262.1}; TaxID=471855 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Slackia.;" source="Slackia heliotrinireducens (strain ATCC 29202 / DSM 20476 / NCTC 11029; / RHS 1) (Peptococcus heliotrinreducens).;"
L1_008_000M1_scaffold_34_14
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(14732..15973)
-----------------
DNA (1242bp)
protein (414aa)
Uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GA83_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EEA90811.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
hypothetical protein
L1_008_000M1_scaffold_34_15
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(15970..17076)
-----------------
DNA (1107bp)
protein (369aa)
Glycosyltransferase, group 1 family protein {ECO:0000313|EMBL:EEA90810.1}; EC=2.4.-.- {ECO:0000313|EMBL:EEA90810.1};; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
Glycosyltransferase, group 1 family protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GA82_9ACTN
glycosytransferase
L1_008_000M1_scaffold_34_16
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(17063..17593)
-----------------
DNA (531bp)
protein (177aa)
Bacterial transferase hexapeptide repeat protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GA81_9ACTN
Bacterial transferase hexapeptide repeat protein {ECO:0000313|EMBL:EEA90809.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
acetyltransferase
L1_008_000M1_scaffold_34_17
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(17596..18777)
-----------------
DNA (1182bp)
protein (394aa)
UDP-N-acetylglucosamine 2-epimerase {ECO:0000313|EMBL:EEA90808.1}; EC=5.1.3.14 {ECO:0000313|EMBL:EEA90808.1};; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
UDP-N-acetylglucosamine 2-epimerase (EC:5.1.3.14)
UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GA80_9ACTN
L1_008_000M1_scaffold_34_18
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(18782..19999)
-----------------
DNA (1218bp)
protein (406aa)
NAD dependent epimerase/dehydratase family protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GA79_9ACTN
NAD dependent epimerase/dehydratase family protein {ECO:0000313|EMBL:EEA90807.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
UDP-2-acetamido-2,6-dideoxy-b-L-lyxo-4-hexulose 4-reductase
L1_008_000M1_scaffold_34_19
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(20001..21059)
-----------------
DNA (1059bp)
protein (353aa)
Polysaccharide biosynthesis protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GA78_9ACTN
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:EEA90806.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
Predicted nucleoside-diphosphate sugar epimerases
L1_008_000M1_scaffold_34_20
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(21060..21836)
-----------------
DNA (777bp)
protein (259aa)
Glycosyltransferase, WecB/TagA/CpsF family {ECO:0000313|EMBL:EEA90804.1}; EC=2.4.1.- {ECO:0000313|EMBL:EEA90804.1};; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
Glycosyltransferase, WecB/TagA/CpsF family n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GA77_9ACTN
Glycosyl transferase
L1_008_000M1_scaffold_34_21
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(21836..22636)
-----------------
DNA (801bp)
protein (267aa)
Bacterial sugar transferase {ECO:0000313|EMBL:EBA40495.1}; EC=2.4.1.- {ECO:0000313|EMBL:EBA40495.1};; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
Bacterial sugar transferase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6Y6_9ACTN
undecaprenyl-phosphate galactose phosphotransferase
L1_008_000M1_scaffold_34_22
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(22652..23203)
-----------------
DNA (552bp)
protein (184aa)
Conserved domain protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6I1_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI73382.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
NusG antitermination factor
L1_008_000M1_scaffold_34_23
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(24118..24759)
-----------------
DNA (642bp)
protein (214aa)
Thiamine diphosphokinase n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F8X5_9ACTN
Thiamine pyrophosphokinase {ECO:0000313|EMBL:KGI73381.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
thiamine pyrophosphokinase
L1_008_000M1_scaffold_34_24
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(24769..25458)
-----------------
DNA (690bp)
protein (230aa)
HAD hydrolase, family IA, variant 3 n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6I4_9ACTN
HAD hydrolase, family IA, variant 3 {ECO:0000313|EMBL:EBA40343.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
thiamine pyrophosphokinase
L1_008_000M1_scaffold_34_25
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

25790..28051
-----------------
DNA (2262bp)
protein (754aa)
1,4-alpha-glucan branching enzyme GlgB {ECO:0000256|HAMAP-Rule:MF_00685}; EC=2.4.1.18 {ECO:0000256|HAMAP-Rule:MF_00685};; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase {ECO:0000256|HAMAP-Rule:MF_00685}; Alpha-(1->4)-glucan branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; Glycogen branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
1,4-alpha-glucan-branching protein (EC:2.4.1.18)
1,4-alpha-glucan branching enzyme GlgB n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6I5_9ACTN
L1_008_000M1_scaffold_34_26
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

28146..30572
-----------------
DNA (2427bp)
protein (809aa)
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587};; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
glycogen/starch/alpha-glucan phosphorylase (EC:2.4.1.1)
Phosphorylase n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZB63_9ACTN
L1_008_000M1_scaffold_34_27
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

30681..31829
-----------------
DNA (1149bp)
protein (383aa)
Glucose-1-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565}; EC=2.7.7.27 {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565};; ADP-glucose pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00624}; ADP-glucose synthase {ECO:0000256|HAMAP-Rule:MF_00624}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
nucleotidyl transferase (EC:2.7.7.27)
Glucose-1-phosphate adenylyltransferase n=2 Tax=Collinsella RepID=A4E6I7_9ACTN
L1_008_000M1_scaffold_34_28
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

31834..32961
-----------------
DNA (1128bp)
protein (376aa)
Glucose-1-phosphate adenylyltransferase, GlgD subunit {ECO:0000313|EMBL:EBA40347.1}; EC=2.7.7.27 {ECO:0000313|EMBL:EBA40347.1};; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
glucose-1-phosphate adenylyltransferase subunit GlgD (EC:2.7.7.27)
Glucose-1-phosphate adenylyltransferase, GlgD subunit n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6I8_9ACTN
L1_008_000M1_scaffold_34_29
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

33052..35316
-----------------
DNA (2265bp)
protein (755aa)
Glycogen synthase {ECO:0000256|HAMAP-Rule:MF_00484}; EC=2.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00484};; Starch [bacterial glycogen] synthase {ECO:0000256|HAMAP-Rule:MF_00484}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
glycogen/starch synthase (EC:2.4.1.21)
Glycogen synthase n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z8S3_9ACTN
L1_008_000M1_scaffold_34_30
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

35745..39041
-----------------
DNA (3297bp)
protein (1099aa)
4-alpha-glucanotransferase n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZHQ3_9ACTN
4-alpha-glucanotransferase {ECO:0000313|EMBL:CDA36074.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
4-alpha-glucanotransferase
Displaying items 1-30 of 160 in total

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