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L1_008_000M1_scaffold_3075

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_3075_1
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(35..718)
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5QBL2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ19636.1}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
PAP2 superfamily.
L1_008_000M1_scaffold_3075_2

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comp(715..1149)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1024 RepID=R5ARH1_9CLOT
Putative lipid kinase YegS/Rv2252/BmrU family {ECO:0000313|EMBL:AIF26030.1}; TaxID=1489285 species="Bacteria; environmental samples.;" source="uncultured bacterium Ad_125_D08.;"
conserved protein of unknown function cotranscribed with Bmr (bmrU)
L1_008_000M1_scaffold_3075_3
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

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comp(1219..1611)
DNA (393bp) protein (131aa)
Lipid kinase YegS/Rv2252/BmrU family n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6E100_9FIRM
Lipid kinase YegS/Rv2252/BmrU family {ECO:0000313|EMBL:CDA90266.1}; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
conserved protein of unknown function cotranscribed with Bmr (bmrU)
L1_008_000M1_scaffold_3075_4
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1732..2523)
DNA (792bp) protein (264aa)
Putative short chain dehydrogenase n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AK21_9CLOT
Putative short chain dehydrogenase {ECO:0000313|EMBL:CCX41147.1}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
Short-chain dehydrogenases of various substrate specificities
L1_008_000M1_scaffold_3075_5
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2513..3904)
DNA (1392bp) protein (464aa)
putative 8-amino-7-oxononanoate synthase/2-amino-3-ketobutyrate coenzyme A ligase (EC:2.3.1.29 2.3.1.47)
2-amino-3-ketobutyrate coenzyme A ligase n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AEL7_9CLOT
2-amino-3-ketobutyrate coenzyme A ligase {ECO:0000313|EMBL:CCX41148.1}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
L1_008_000M1_scaffold_3075_6
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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3952..4206
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2DDE0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KGF56433.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L1_008_000M1_scaffold_3075_7
butyrate-producing bacterium SM4/1, Clostridiales, Clostridia, Firmicutes, Bacteria

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4241..4753
DNA (513bp) protein (171aa)
Protein-tyrosine-phosphatase (EC:3.1.3.48)
Protein-tyrosine-phosphatase {ECO:0000313|EMBL:CBL36229.1}; EC=3.1.3.48 {ECO:0000313|EMBL:CBL36229.1};; TaxID=245012 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SM4/1.;"
Protein-tyrosine-phosphatase n=1 Tax=butyrate-producing bacterium SM4/1 RepID=D4MR43_9FIRM
L1_008_000M1_scaffold_3075_8
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4859..5623)
DNA (765bp) protein (255aa)
Putative HTH-type transcriptional activator mta n=2 Tax=Oscillibacter RepID=U2RGX8_9FIRM
Putative HTH-type transcriptional activator mta {ECO:0000313|EMBL:ERK67839.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
transcriptional regulator
L1_008_000M1_scaffold_3075_9
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5806..7221)
DNA (1416bp) protein (472aa)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
purB; adenylosuccinate lyase (EC:4.3.2.2)
Adenylosuccinate lyase n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6UBJ9_9FIRM
L1_008_000M1_scaffold_3075_10
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(7234..8508)
DNA (1275bp) protein (425aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
purA; adenylosuccinate synthetase (EC:6.3.4.4)
Adenylosuccinate synthetase n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IH46_9FIRM
L1_008_000M1_scaffold_3075_11
unknown

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comp(8675..9226)
DNA (552bp) protein (184aa)

This feature has no annotations

L1_008_000M1_scaffold_3075_12
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9330..11624)
DNA (2295bp) protein (765aa)
B12 binding domain./Pterin binding enzyme./Homocysteine S-methyltransferase. (EC:2.1.1.13)
Putative 5-methyltetrahydrofolate--homocysteine methyltransferase n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NZH5_9FIRM
Putative 5-methyltetrahydrofolate--homocysteine methyltransferase {ECO:0000313|EMBL:EDM98824.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
Displaying 12 items

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