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L1_008_000M1_scaffold_3204

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_3204_1
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..226
-----------------
DNA (225bp)
protein (75aa)
Elongation factor Tu n=1 Tax=Clostridium sp. CAG:226 RepID=R5B543_9CLOT
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
elongation factor Tu
L1_008_000M1_scaffold_3204_2
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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403..1113
-----------------
DNA (711bp)
protein (237aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AMM4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX42027.1}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
hypothetical protein
L1_008_000M1_scaffold_3204_3
BJP_IG2157_Clostridiales_52_13, Dethiosulfatibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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1126..1926
-----------------
DNA (801bp)
protein (267aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1024 RepID=R5ANY6_9CLOT
hypothetical protein
Tax=BJP_IG2157_Clostridiales_52_13
L1_008_000M1_scaffold_3204_4
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2021..2713)
-----------------
DNA (693bp)
protein (231aa)
50S ribosomal protein L1 n=1 Tax=Clostridium sp. CAG:226 RepID=R5BAC1_9CLOT
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
50S ribosomal protein L1
L1_008_000M1_scaffold_3204_5
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2728..3153)
-----------------
DNA (426bp)
protein (142aa)
50S ribosomal protein L11 n=1 Tax=Clostridium sp. CAG:226 RepID=R5B7E8_9CLOT
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
50S ribosomal protein L11
L1_008_000M1_scaffold_3204_6
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3291..3809)
-----------------
DNA (519bp)
protein (173aa)
Transcription termination/antitermination protein NusG n=1 Tax=Clostridium sp. CAG:226 RepID=R5BEE4_9CLOT
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
nusG; transcription antitermination protein NusG
L1_008_000M1_scaffold_3204_7
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3833..4081)
-----------------
DNA (249bp)
protein (83aa)
Protein translocase subunit SecE n=1 Tax=Clostridium sp. CAG:226 RepID=R5BIE4_9CLOT
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
secE; putative preprotein translocase subunit secE
L1_008_000M1_scaffold_3204_8
Clostridium sp. CAG:138, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4097..4246)
-----------------
DNA (150bp)
protein (50aa)
50S ribosomal protein L33 n=1 Tax=Clostridium sp. CAG:226 RepID=R5B6K1_9CLOT
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1262775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:138.;"
hypothetical protein
L1_008_000M1_scaffold_3204_9
unknown

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comp(4456..4749)
-----------------
DNA (294bp)
protein (98aa)

This feature has no annotations

L1_008_000M1_scaffold_3204_10
unknown

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comp(4789..5976)
-----------------
DNA (1188bp)
protein (396aa)

This feature has no annotations

L1_008_000M1_scaffold_3204_11
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6095..6841
-----------------
DNA (747bp)
protein (249aa)
Hydrolase NUDIX family n=1 Tax=Clostridium sp. CAG:226 RepID=R5B221_9CLOT
Hydrolase NUDIX family {ECO:0000313|EMBL:CCX49595.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
ADP-ribose pyrophosphatase
L1_008_000M1_scaffold_3204_12
unknown

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6863..7021
-----------------
DNA (159bp)
protein (53aa)

This feature has no annotations

L1_008_000M1_scaffold_3204_13
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7027..7740
-----------------
DNA (714bp)
protein (238aa)
Integral membrane protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5BDV2_9CLOT
Integral membrane protein {ECO:0000313|EMBL:CCX49596.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
Integral membrane protein
L1_008_000M1_scaffold_3204_14
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7912..8991
-----------------
DNA (1080bp)
protein (360aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00018957}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
gcp; putative O-sialoglycoprotein endopeptidase (EC:3.4.24.57)
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Clostridium sp. CAG:1024 RepID=R5APJ0_9CLOT
L1_008_000M1_scaffold_3204_15
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8922..9155)
-----------------
DNA (234bp)
protein (78aa)
N-acetylmuramoyl-L-alanine amidase CwlD n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AEQ8_9CLOT
N-acetylmuramoyl-L-alanine amidase CwlD {ECO:0000313|EMBL:CCX41198.1}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
cwlu
L1_008_000M1_scaffold_3204_16
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9115..9663)
-----------------
DNA (549bp)
protein (183aa)
N-acetylmuramoyl-L-alanine amidase CwlD n=1 Tax=Clostridium sp. CAG:226 RepID=R5BE71_9CLOT
N-acetylmuramoyl-L-alanine amidase CwlD {ECO:0000313|EMBL:CCX51147.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
cell wall hydrolase/autolysin
L1_008_000M1_scaffold_3204_17
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10045..11049)
-----------------
DNA (1005bp)
protein (335aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RQK5_9FIRM
Dihydroflavonol 4-reductase {ECO:0000313|EMBL:KJF38287.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
NAD-dependent epimerase/dehydratase
L1_008_000M1_scaffold_3204_18
BJP_IG2069_Clostridiales_48_15, Clostridiales, Clostridia, Firmicutes, Bacteria

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11297..11890
-----------------
DNA (594bp)
protein (198aa)
Transcriptional regulator n=1 Tax=Gordonibacter pamelaeae 7-10-1-b RepID=D6E7X0_9ACTN
Transcriptional regulator
Tax=BJP_IG2069_Clostridiales_48_15
L1_008_000M1_scaffold_3204_19
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11916..12374
-----------------
DNA (459bp)
protein (153aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01468};; Mini-RNase III {ECO:0000256|HAMAP-Rule:MF_01468}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
Mini-ribonuclease 3 n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AQ07_9CLOT
hypothetical protein
L1_008_000M1_scaffold_3204_20
Desulfotomaculum gibsoniae, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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12468..13244
-----------------
DNA (777bp)
protein (259aa)
Thymidylate synthase ThyX {ECO:0000256|HAMAP-Rule:MF_01408}; Short=TS {ECO:0000256|HAMAP-Rule:MF_01408};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_01408};; EC=2.1.1.148 {ECO:0000256|HAMAP-Rule:MF_01408};; TaxID=767817 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum gibsoniae DSM 7213.;"
Thymidylate synthase ThyX n=1 Tax=Desulfotomaculum gibsoniae DSM 7213 RepID=R4K9T2_9FIRM
thymidylate synthase, flavin-dependent
L1_008_000M1_scaffold_3204_21
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13277..14488
-----------------
DNA (1212bp)
protein (404aa)
TrmH family tRNA/rRNA methyltransferase YacO n=1 Tax=Clostridium sp. CAG:226 RepID=R5BEK6_9CLOT
TrmH family tRNA/rRNA methyltransferase YacO {ECO:0000313|EMBL:CCX49851.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
RNA methyltransferase
L1_008_000M1_scaffold_3204_22
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14539..15162
-----------------
DNA (624bp)
protein (208aa)
RNA polymerase sigma-30 factor (Sigma(H)) n=1 Tax=Clostridium sp. CAG:226 RepID=R5B2N1_9CLOT
RNA polymerase sigma-30 factor (Sigma(H)) {ECO:0000313|EMBL:CCX49850.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
RNA polymerase factor sigma-70
L1_008_000M1_scaffold_3204_23
Vibrio fortis, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

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15551..17059
-----------------
DNA (1509bp)
protein (503aa)
Putative integron gene cassette protein (Fragment) n=1 Tax=uncultured bacterium RepID=B0BFH0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KDN29073.1}; TaxID=212667 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio fortis.;"
serine/threonine protein kinase
L1_008_000M1_scaffold_3204_24
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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17406..18344
-----------------
DNA (939bp)
protein (313aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6M1U5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB88381.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
ribokinase family sugar kinase
L1_008_000M1_scaffold_3204_25
Thermosinus carboxydivorans, Thermosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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18384..18752
-----------------
DNA (369bp)
protein (123aa)
Cupin 2, conserved barrel domain protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HTL8_9FIRM
Cupin 2, conserved barrel domain protein {ECO:0000313|EMBL:EAX46629.1}; TaxID=401526 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Thermosinus.;" source="Thermosinus carboxydivorans Nor1.;"
cupin domain-containing protein
L1_008_000M1_scaffold_3204_26
Staphylococcus sp. CAG:324, Tenericutes, Bacteria

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19416..20096
-----------------
DNA (681bp)
protein (227aa)
Uncharacterized protein n=1 Tax=Staphylococcus sp. CAG:324 RepID=R6TQ20_9STAP
Uncharacterized protein {ECO:0000313|EMBL:CDC69986.1}; TaxID=1262969 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus; environmental samples.;" source="Staphylococcus sp. CAG:324.;"
bifunctional deaminase-reductase domain-containing protein
Displaying 26 items

View Taxonomy