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L1_008_000M1_scaffold_3383

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_3383_1
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..105)
DNA (105bp) protein (35aa)
50S ribosomal protein L23 n=1 Tax=Clostridium sp. CAG:226 RepID=R5B2T9_9CLOT
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369, ECO:0000256|RuleBase:RU003935}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
rplW; 50S ribosomal protein L23
L1_008_000M1_scaffold_3383_2
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(105..725)
DNA (621bp) protein (207aa)
50S ribosomal protein L4 n=1 Tax=Clostridium sp. CAG:226 RepID=R5BER6_9CLOT
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
rplD; 50S ribosomal protein L4
L1_008_000M1_scaffold_3383_3
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(753..1379)
DNA (627bp) protein (209aa)
50S ribosomal protein L3 n=1 Tax=Clostridium sp. CAG:226 RepID=R5BAN1_9CLOT
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
50S ribosomal protein L3, bacterial
L1_008_000M1_scaffold_3383_4
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1400..1708)
DNA (309bp) protein (103aa)
30S ribosomal protein S10 n=1 Tax=Clostridium sp. CAG:226 RepID=R5B3P1_9CLOT
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
30S ribosomal protein S10
L1_008_000M1_scaffold_3383_5
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2051..2293)
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D186_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG54902.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
L1_008_000M1_scaffold_3383_6
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2570..3130)
DNA (561bp) protein (187aa)
ABC transporter ATP-binding protein n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AKB5_9CLOT
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CCX41247.1}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
ABC transporter
L1_008_000M1_scaffold_3383_7
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3127..3858)
DNA (732bp) protein (244aa)
ABC-type nitrate/sulfonate/bicarbonate transport system permease component n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AEU7_9CLOT
ABC-type nitrate/sulfonate/bicarbonate transport system permease component {ECO:0000313|EMBL:CCX41248.1}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
hypothetical protein
L1_008_000M1_scaffold_3383_8
Clostridium sp. CAG:138, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3913..4884)
DNA (972bp) protein (324aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:138 RepID=R6AWT6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA53299.1}; TaxID=1262775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:138.;"
hypothetical protein
L1_008_000M1_scaffold_3383_9
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4881..5564)
DNA (684bp) protein (228aa)
Cyclic nucleotide-binding domain protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NTY9_9FIRM
Cyclic nucleotide-binding domain protein {ECO:0000313|EMBL:EDN00336.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L1_008_000M1_scaffold_3383_10
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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5775..6119
DNA (345bp) protein (115aa)
Transcriptional regulator, PadR family n=3 Tax=Clostridiales RepID=G9YSI4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO33497.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
PadR-like family transcriptional regulator
L1_008_000M1_scaffold_3383_11
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6124..6954
DNA (831bp) protein (277aa)
Putative uncharacterized protein n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KIP7_CLOPH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX43910.1}; Flags: Precursor;; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L1_008_000M1_scaffold_3383_12
unknown

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6951..7733
DNA (783bp) protein (261aa)

This feature has no annotations

L1_008_000M1_scaffold_3383_13
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7843..8394
DNA (552bp) protein (184aa)
GCN5 family N-acetyltransferase n=1 Tax=Treponema bryantii RepID=UPI0003B78596
Acetyltransferase, GNAT family {ECO:0000313|EMBL:ERI69249.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
GNAT family acetyltransferase
L1_008_000M1_scaffold_3383_14
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8436..10169)
DNA (1734bp) protein (578aa)
fhbC; FhbC (EC:1.6.5.3)
NAD(P)-dependent iron-only hydrogenase catalytic subunit n=1 Tax=Clostridium sp. CAG:226 RepID=R5BD93_9CLOT
NAD(P)-dependent iron-only hydrogenase catalytic subunit {ECO:0000313|EMBL:CCX50827.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
L1_008_000M1_scaffold_3383_15
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10363..10587)
DNA (225bp) protein (75aa)
Elongation factor Tu n=1 Tax=Clostridium sp. CAG:226 RepID=R5B543_9CLOT
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
elongation factor Tu
Displaying 15 items

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