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L1_008_000M1_scaffold_1817

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1817_1
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

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comp(1..444)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5EKJ1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX91874.1}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
amino acid/amide ABC transporter ATP-binding protein 2, HAAT family (TC 3.A.1.4.-)
L1_008_000M1_scaffold_1817_2
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

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comp(449..1276)
DNA (828bp) protein (276aa)
ABC transporter ATP-binding protein n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6U8U8_9FIRM
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDC76496.1}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
amino acid/amide ABC transporter ATP-binding protein 1, HAAT family (TC 3.A.1.4.-)
L1_008_000M1_scaffold_1817_3
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1269..2276)
DNA (1008bp) protein (336aa)
ABC-type transporter, integral membrane subunit n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JQQ4_CELLD
ABC transporter permease
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:ADZ82649.1}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
L1_008_000M1_scaffold_1817_4
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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comp(2287..3165)
DNA (879bp) protein (293aa)
ABC-type transporter integral membrane subunit n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D5E9_9FIRM
ABC-type transporter integral membrane subunit {ECO:0000313|EMBL:CCX74004.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
ABC transporter permease
L1_008_000M1_scaffold_1817_5
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3287..4519)
DNA (1233bp) protein (411aa)
Putative uncharacterized protein n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5IGM0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI59341.1}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
Extracellular ligand-binding receptor
L1_008_000M1_scaffold_1817_6
unknown

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comp(4610..4786)
DNA (177bp) protein (59aa)

This feature has no annotations

L1_008_000M1_scaffold_1817_7
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5085..6911
DNA (1827bp) protein (609aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; GFAT {ECO:0000256|HAMAP-Rule:MF_00164}; Glucosamine-6-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00164}; Hexosephosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; L-glutamine--D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Clostridium sp. CAG:226 RepID=R5B7G9_9CLOT
glucosamine/fructose-6-phosphate aminotransferase
L1_008_000M1_scaffold_1817_8
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7098..8189)
DNA (1092bp) protein (364aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:505 RepID=R7APE4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD62678.1}; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:505.;"
hypothetical protein
L1_008_000M1_scaffold_1817_9
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8428..8919
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B512_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX50398.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
VlhA.3.06 variable lipoprotein family protein
L1_008_000M1_scaffold_1817_10
Eubacterium sp. CAG:841, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9101..10039
DNA (939bp) protein (313aa)
XRE family transcriptional regulator n=1 Tax=Eubacterium sp. CAG:841 RepID=R7FQ91_9FIRM
XRE family transcriptional regulator {ECO:0000313|EMBL:CDE17479.1}; TaxID=1262894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:841.;"
hypothetical protein
L1_008_000M1_scaffold_1817_11
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10113..10646
DNA (534bp) protein (178aa)
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
2'-5' RNA ligase n=1 Tax=Clostridium sp. CAG:226 RepID=R5BDD6_9CLOT
2'-5' RNA ligase
L1_008_000M1_scaffold_1817_12
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10646..13963
DNA (3318bp) protein (1106aa)
ATP-dependent helicase/deoxyribonuclease subunit B n=1 Tax=Clostridium sp. CAG:226 RepID=R5BHD5_9CLOT
ATP-dependent helicase/deoxyribonuclease subunit B {ECO:0000313|EMBL:CCX50861.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
ATP-dependent nuclease subunit B
L1_008_000M1_scaffold_1817_13
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13944..17453
DNA (3510bp) protein (1170aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
addA; ATP-dependent helicase/nuclease subunit A (EC:3.1.-.- 3.6.4.12)
ATP-dependent helicase/nuclease subunit A n=1 Tax=Clostridium sp. CAG:226 RepID=R5B5L3_9CLOT
L1_008_000M1_scaffold_1817_14
Spirochaeta smaragdinae, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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17535..18668
DNA (1134bp) protein (378aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein n=1 Tax=Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228) RepID=E1R6H3_SPISS
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
4Fe-4S ferredoxin iron-sulfur binding domain protein {ECO:0000313|EMBL:ADK80991.1}; TaxID=573413 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228).;"
Displaying 14 items

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