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L1_008_000M1_scaffold_1255

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1255_1
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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454..1050
DNA (597bp) protein (199aa)
Glycerol-3-phosphate acyltransferase n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K355_9FIRM
conserved hypothetical integral membrane protein TIGR00023
Glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-PO4 G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-phosphate--glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Lysophosphatidic acid synthase {ECO:0000256|HAMAP-Rule:MF_01043}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L1_008_000M1_scaffold_1255_2
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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1228..2211
DNA (984bp) protein (328aa)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00394}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
gpsA; glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC:1.1.1.94)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=1 Tax=Oscillibacter sp. 1-3 RepID=R9LXI8_9FIRM
L1_008_000M1_scaffold_1255_3
Firmicutes bacterium CAG:822, Firmicutes, Bacteria

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comp(2287..2835)
DNA (549bp) protein (183aa)
Conserved domain protein n=1 Tax=Firmicutes bacterium CAG:822 RepID=R5JCJ9_9FIRM
Conserved domain protein {ECO:0000313|EMBL:CCY46502.1}; TaxID=1263032 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:822.;"
L1_008_000M1_scaffold_1255_4
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2940..4730)
DNA (1791bp) protein (597aa)
Aspartate--tRNA ligase {ECO:0000313|EMBL:EDS09702.1}; EC=6.1.1.12 {ECO:0000313|EMBL:EDS09702.1};; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
aspS1; Aspartate-tRNA ligase (EC:6.1.1.12)
Aspartate--tRNA ligase n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PGB4_9FIRM
L1_008_000M1_scaffold_1255_5
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5370..6626)
DNA (1257bp) protein (419aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine--tRNA ligase n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PGB5_9FIRM
L1_008_000M1_scaffold_1255_6
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6879..7283)
DNA (405bp) protein (135aa)
mgsA; Methylglyoxal synthase (EC:4.2.3.3)
Methylglyoxal synthase {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089917}; Short=MGS {ECO:0000256|HAMAP-Rule:MF_00549};; EC=4.2.3.3 {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089921};; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Methylglyoxal synthase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TBR8_9FIRM
L1_008_000M1_scaffold_1255_7
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7327..8028)
DNA (702bp) protein (234aa)
Septum site-determining protein MinD n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EA45_9CLOT
septum site-determining protein MinD
Site-determining protein {ECO:0000256|PIRNR:PIRNR003092}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
L1_008_000M1_scaffold_1255_8
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8429..10702)
DNA (2274bp) protein (758aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LBK2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS55741.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
Cell division protein FtsI/penicillin-binding protein 2
L1_008_000M1_scaffold_1255_9
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10780..11304)
DNA (525bp) protein (175aa)
Rod shape-determining protein MreD n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6QEG0_9FIRM
Rod shape-determining protein MreD {ECO:0000313|EMBL:CDC29276.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
rod shape-determining protein MreD.
L1_008_000M1_scaffold_1255_10
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11479..12357)
DNA (879bp) protein (293aa)
Cell shape-determining protein MreC n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PGC2_9FIRM
Cell shape-determining protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Cell shape protein MreC {ECO:0000256|PIRNR:PIRNR038471}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
rod shape-determining protein MreC
L1_008_000M1_scaffold_1255_11
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12393..13409)
DNA (1017bp) protein (339aa)
Cell shape determining protein MreB/Mrl family n=2 Tax=root RepID=R6CD38_9CLOT
Cell shape determining protein MreB/Mrl family {ECO:0000313|EMBL:CDA63222.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
rod shape-determining protein MreB
L1_008_000M1_scaffold_1255_12
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14026..17637
DNA (3612bp) protein (1204aa)
Pyruvate-flavodoxin oxidoreductase {ECO:0000256|PIRNR:PIRNR000159}; EC=1.2.7.- {ECO:0000256|PIRNR:PIRNR000159};; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
nifJ3; Pyruvate-flavodoxin oxidoreductase (EC:1.2.7.-)
Pyruvate-flavodoxin oxidoreductase n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PAE1_9FIRM
L1_008_000M1_scaffold_1255_13
Mitsuokella sp. oral taxon 131, Mitsuokella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(17693..18211)
DNA (519bp) protein (173aa)
Peptidase, M23 family n=1 Tax=Mitsuokella sp. oral taxon 131 str. W9106 RepID=U2SQS6_9FIRM
Peptidase, M23 family {ECO:0000313|EMBL:ERL03179.1}; TaxID=1321781 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Mitsuokella.;" source="Mitsuokella sp. oral taxon 131 str. W9106.;"
L1_008_000M1_scaffold_1255_14
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18372..20456)
DNA (2085bp) protein (695aa)
Glutamate--ammonia ligase, catalytic domain protein {ECO:0000313|EMBL:EEG31517.1}; EC=6.3.1.2 {ECO:0000313|EMBL:EEG31517.1};; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
glnA3-2; Type-3 glutamine synthetase (EC:6.3.1.2)
Glutamate--ammonia ligase, catalytic domain protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAH2_9CLOT
L1_008_000M1_scaffold_1255_15
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20750..21184)
DNA (435bp) protein (145aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEG2_9FIRM
L1_008_000M1_scaffold_1255_16
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

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comp(21378..22604)
DNA (1227bp) protein (409aa)
Shikimate dehydrogenase/shikimate kinase n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AZP5_9FIRM
Shikimate dehydrogenase/shikimate kinase {ECO:0000313|EMBL:CCX47429.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
Shikimate 5-dehydrogenase
L1_008_000M1_scaffold_1255_17
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22830..23876)
DNA (1047bp) protein (349aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
aroB; 3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TEX0_9FIRM
L1_008_000M1_scaffold_1255_18
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24117..25229)
DNA (1113bp) protein (371aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6VTN2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD02023.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
hypothetical protein
Displaying 18 items

View Taxonomy