ggKbase home page

L1_008_000M1_scaffold_1338

Search features with annotation key words

Displaying 26 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1338_1
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(382..747)
DNA (366bp) protein (122aa)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00071085}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00071082};; 4'-phosphopantetheinyl transferase AcpS {ECO:0000256|HAMAP-Rule:MF_00101}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
Holo-[acyl-carrier-protein] synthase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E977_9CLOT
holo-(acyl-carrier-protein) synthase
L1_008_000M1_scaffold_1338_2
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


1140..2159
DNA (1020bp) protein (340aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Clostridium sp. CAG:242 RepID=R6CQE1_9CLOT
phenylalanyl-tRNA synthetase subunit alpha
L1_008_000M1_scaffold_1338_3
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


2181..4556
DNA (2376bp) protein (792aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Clostridium sp. CAG:242 RepID=R6D174_9CLOT
L1_008_000M1_scaffold_1338_4
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4731..4982
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L582_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE82372.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
hypothetical protein
L1_008_000M1_scaffold_1338_5
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5024..5305
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BLC5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA61624.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
hypothetical protein
L1_008_000M1_scaffold_1338_6
Clostridium sp. CAG:269, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5360..6031)
DNA (672bp) protein (224aa)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=1262788 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:269.;"
tRNA (guanine-N(7)-)-methyltransferase (EC:2.1.1.33)
tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Clostridium sp. CAG:269 RepID=R7IXV9_9CLOT
L1_008_000M1_scaffold_1338_7
Coprococcus catus, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6053..6928)
DNA (876bp) protein (292aa)
Uncharacterized conserved protein n=1 Tax=Coprococcus catus GD/7 RepID=D4J6Y6_9FIRM
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CBK80107.1}; TaxID=717962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus catus GD/7.;"
L1_008_000M1_scaffold_1338_8
Anaerotruncus sp. CAG:528, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6946..7350)
DNA (405bp) protein (135aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01468};; Mini-RNase III {ECO:0000256|HAMAP-Rule:MF_01468}; TaxID=1262700 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:528.;"
Mini-ribonuclease 3 n=1 Tax=Anaerotruncus sp. CAG:528 RepID=R5XKW8_9FIRM
hypothetical protein
L1_008_000M1_scaffold_1338_9
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7350..8645)
DNA (1296bp) protein (432aa)
GTPase Obg n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LK77_9FIRM
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
Obg family GTPase CgtA
L1_008_000M1_scaffold_1338_10
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(8745..9002)
DNA (258bp) protein (86aa)
50S ribosomal protein L27 n=1 Tax=Clostridium sp. CAG:678 RepID=R5L899_9CLOT
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
50S ribosomal protein L27
L1_008_000M1_scaffold_1338_11
Ruminococcus sp. CAG:254, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(9006..9569)
DNA (564bp) protein (188aa)
50S ribosomal protein L21 n=1 Tax=Ruminococcus sp. CAG:254 RepID=R5UXK9_9FIRM
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=1262953 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:254.;"
50S ribosomal protein L21
L1_008_000M1_scaffold_1338_12
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10543..11313)
DNA (771bp) protein (257aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
ribF; Riboflavin kinase / FMN adenylyltransferase (EC:2.7.7.2)
Riboflavin biosynthesis protein RibF n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RTJ2_9FIRM
L1_008_000M1_scaffold_1338_13
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11307..12242)
DNA (936bp) protein (312aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043051}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043054};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
tRNA pseudouridine 55 synthase (EC:5.4.99.12)
tRNA pseudouridine synthase B n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PH12_9FIRM
L1_008_000M1_scaffold_1338_14
Eubacterium sp. CAG:251, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12239..13210)
DNA (972bp) protein (324aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:251 RepID=R6RGA1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC33477.1}; TaxID=1262886 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:251.;"
phosphoesterase RecJ domain-containing protein
L1_008_000M1_scaffold_1338_15
Ruminococcus sp. CAG:330, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13207..13578)
DNA (372bp) protein (124aa)
Ribosome-binding factor A n=1 Tax=Ruminococcus sp. CAG:330 RepID=R7F8Y7_9FIRM
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=1262954 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:330.;"
ribosome-binding factor A
L1_008_000M1_scaffold_1338_16
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13670..16354)
DNA (2685bp) protein (895aa)
Translation initiation factor IF-2 n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PH15_9FIRM
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
infB; Translation initiation factor IF-2
L1_008_000M1_scaffold_1338_17
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16351..16680)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LC59_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS56359.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
hypothetical protein
L1_008_000M1_scaffold_1338_18
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16673..16945)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LCD6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS56360.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
hypothetical protein
L1_008_000M1_scaffold_1338_19
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16970..18073)
DNA (1104bp) protein (368aa)
Transcription termination factor NusA n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LDC1_9FIRM
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
transcription termination factor NusA
L1_008_000M1_scaffold_1338_20
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18070..18552)
DNA (483bp) protein (161aa)
Ribosome maturation factor RimP n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PH19_9FIRM
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
hypothetical protein
L1_008_000M1_scaffold_1338_21
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

comp(18716..19471)
DNA (756bp) protein (252aa)
4Fe-4S binding domain protein n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AW44_9FIRM
4Fe-4S binding domain protein {ECO:0000313|EMBL:CCX46184.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
hypothetical protein
L1_008_000M1_scaffold_1338_22
unknown

Not on your lists

comp(19498..21213)
DNA (1716bp) protein (572aa)

This feature has no annotations

L1_008_000M1_scaffold_1338_23
Roseburia sp. CAG:100, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21343..22020)
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:100 RepID=R7R6E9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF45456.1}; TaxID=1262940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:100.;"
Predicted DNA alkylation repair enzyme
L1_008_000M1_scaffold_1338_24
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22142..23983)
DNA (1842bp) protein (614aa)
Cadmium-exporting ATPase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I8H5_9FIRM
Cadmium-exporting ATPase {ECO:0000313|EMBL:CDB42789.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
heavy metal translocating P-type ATPase
L1_008_000M1_scaffold_1338_25
Clostridium sp. CAG:448, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24021..24242)
DNA (222bp) protein (74aa)
Cadmium-exporting ATPase n=1 Tax=Clostridium sp. CAG:448 RepID=R6SR98_9CLOT
Cadmium-exporting ATPase {ECO:0000313|EMBL:CDC62445.1}; TaxID=1262808 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:448.;"
hypothetical protein
L1_008_000M1_scaffold_1338_26
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24244..24624)
DNA (381bp) protein (127aa)
Transcriptional regulator ArsR family n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IXR6_9FIRM
Transcriptional regulator ArsR family {ECO:0000313|EMBL:CDB42787.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
hypothetical protein
Displaying 26 items

View Taxonomy