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L1_008_000M1_scaffold_1626

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1626_1
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(483..1766)
DNA (1284bp) protein (428aa)
bifunctional folylpolyglutamate synthase/dihydrofolate synthase (EC:6.3.2.17)
Bifunctional protein FolC n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EHC4_9CLOT
Bifunctional protein FolC {ECO:0000313|EMBL:EEG29211.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
L1_008_000M1_scaffold_1626_2
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2283..4982)
DNA (2700bp) protein (900aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase n=1 Tax=Clostridium sp. CAG:413 RepID=R6PS05_9CLOT
L1_008_000M1_scaffold_1626_3
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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comp(5520..5936)
DNA (417bp) protein (139aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
riboflavin biosynthesis protein RibF (EC:2.7.7.2 2.7.1.26)
riboflavin biosynthesis protein RibF n=1 Tax=Clostridiales bacterium NK3B98 RepID=UPI0003B6A80F
L1_008_000M1_scaffold_1626_4
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5941..6486)
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GKH4_EUBLK
hypothetical protein
Riboflavin transporter {ECO:0000256|PIRNR:PIRNR037778}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
L1_008_000M1_scaffold_1626_5
Clostridium sp. CAG:964, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6876..7409)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:964 RepID=R6UDB8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC82495.1}; TaxID=1262848 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:964.;"
hypothetical protein
L1_008_000M1_scaffold_1626_6
unknown

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7474..7725
DNA (252bp) protein (84aa)

This feature has no annotations

L1_008_000M1_scaffold_1626_7
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(7654..9747)
DNA (2094bp) protein (698aa)
Putative membrane protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IMN5_9FIRM
Putative membrane protein {ECO:0000313|EMBL:CCY43365.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
TRAP transporter, 4TM/12TM fusion protein
L1_008_000M1_scaffold_1626_8
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9918..10931)
DNA (1014bp) protein (338aa)
TRAP transporter solute receptor TAXI family n=1 Tax=Clostridium sp. CAG:58 RepID=R6R952_9CLOT
TRAP transporter solute receptor TAXI family {ECO:0000313|EMBL:CDC45438.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
TRAP transporter solute receptor, TAXI family
L1_008_000M1_scaffold_1626_9
Ruminococcus sp. CAG:579, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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11361..11927
DNA (567bp) protein (189aa)
metal dependent phosphohydrolase (EC:3.1.3.5)
Metal dependent phosphohydrolase n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6C880_9FIRM
Metal dependent phosphohydrolase {ECO:0000313|EMBL:CDA71770.1}; TaxID=1262963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:579.;"
L1_008_000M1_scaffold_1626_10
Megamonas funiformis, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(12084..13553)
DNA (1470bp) protein (490aa)
Solute:sodium symporter (SSS) family transporter n=1 Tax=Megamonas funiformis YIT 11815 RepID=H3K7J4_9FIRM
Solute:sodium symporter (SSS) family transporter {ECO:0000313|EMBL:EHR37299.1}; TaxID=742816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas.;" source="Megamonas funiformis YIT 11815.;"
Na+/solute symporter
L1_008_000M1_scaffold_1626_11
unknown

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comp(13566..13673)
DNA (108bp) protein (36aa)

This feature has no annotations

L1_008_000M1_scaffold_1626_12
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13687..15033)
DNA (1347bp) protein (449aa)
Amidohydrolase family protein n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2EWC5_CLOS4
Amidohydrolase family protein {ECO:0000313|EMBL:ERI97371.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
SsnA; cytosine deaminase
L1_008_000M1_scaffold_1626_13
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15309..16061)
DNA (753bp) protein (251aa)
Transcriptional regulator, GntR family n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CXF6_9CLOT
Transcriptional regulator, GntR family {ECO:0000313|EMBL:EEG56237.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
GntR family transcriptional regulator
L1_008_000M1_scaffold_1626_14
BJP_IG2157_Clostridiales_52_13, Dethiosulfatibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16211..17821)
DNA (1611bp) protein (537aa)
5'-nucleotidase C-terminal domain protein n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IDV9_9FIRM
5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterases-like protein
Tax=BJP_IG2157_Clostridiales_52_13
L1_008_000M1_scaffold_1626_15
unknown

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comp(18118..18252)
DNA (135bp) protein (45aa)

This feature has no annotations

L1_008_000M1_scaffold_1626_16
unknown

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18398..19258
DNA (861bp) protein (287aa)

This feature has no annotations

L1_008_000M1_scaffold_1626_17
Desulfitobacterium hafniense, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19363..19917
DNA (555bp) protein (185aa)
RNA polymerase subunit sigma-54 n=1 Tax=Desulfitobacterium hafniense RepID=UPI00036B404D
RNA polymerase, sigma-24 subunit, ECF sub {ECO:0000313|EMBL:CDX02269.1}; TaxID=49338 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium hafniense (Desulfitobacterium frappieri).;"
hypothetical protein
L1_008_000M1_scaffold_1626_18
unknown

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19914..20681
DNA (768bp) protein (256aa)
hypothetical protein
L1_008_000M1_scaffold_1626_19
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

Not on your lists

comp(20764..22209)
DNA (1446bp) protein (482aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D8W0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX75264.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
recombinase
L1_008_000M1_scaffold_1626_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22236..22385)
DNA (150bp) protein (50aa)
Resolvase, N domain protein n=1 Tax=human gut metagenome RepID=K1UZE9_9ZZZZ
Resolvase, N-terminal domain protein {ECO:0000313|EMBL:EFB77122.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Site-specific recombinases, DNA invertase Pin homologs
Displaying 20 items

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