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L1_008_000M1_scaffold_1994

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_1994_1
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(1..978)
DNA (978bp) protein (326aa)
Metal cation transporter ZIP family n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IU43_9FIRM
Metal cation transporter ZIP family {ECO:0000313|EMBL:CCY40256.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
putative esterase
L1_008_000M1_scaffold_1994_2
Collinsella sp. CAG:398, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(991..1599)
DNA (609bp) protein (203aa)
methyltransferase n=1 Tax=Ruminococcus sp. JC304 RepID=UPI00031364F7
Methyltransferase domain protein {ECO:0000313|EMBL:CDD41205.1}; TaxID=1262852 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:398.;"
Methylase involved in ubiquinone/menaquinone biosynthesis
L1_008_000M1_scaffold_1994_3
Clostridium sp. CAG:138, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1651..2214)
DNA (564bp) protein (188aa)
Methyltransferase domain protein n=1 Tax=Clostridium sp. CAG:138 RepID=R6AHZ7_9CLOT
Methyltransferase domain protein {ECO:0000313|EMBL:CDA51573.1}; TaxID=1262775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:138.;"
Methylase involved in ubiquinone/menaquinone biosynthesis
L1_008_000M1_scaffold_1994_4
Eubacterium sp. CAG:841, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2325..2861)
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI000317BC58
Putative TetR family transcriptional regulator {ECO:0000313|EMBL:CDE18812.1}; TaxID=1262894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:841.;"
putative TetR family transcriptional regulator
L1_008_000M1_scaffold_1994_5
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3392..3703)
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AFR0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX42115.1}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
hypothetical protein
L1_008_000M1_scaffold_1994_6
unknown

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comp(3753..4922)
DNA (1170bp) protein (390aa)

This feature has no annotations

L1_008_000M1_scaffold_1994_7
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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5165..6172
DNA (1008bp) protein (336aa)
putative L-asparaginase (EC:3.5.1.1)
L-asparaginase, type I n=2 Tax=Oscillibacter RepID=U2QM01_9FIRM
L-asparaginase, type I {ECO:0000313|EMBL:ERK63879.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
L1_008_000M1_scaffold_1994_8
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

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comp(6416..7414)
DNA (999bp) protein (333aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121, ECO:0000256|RuleBase:RU004501}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121, ECO:0000256|RuleBase:RU004501};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
Aspartate-semialdehyde dehydrogenase n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AXV9_9FIRM
aspartate semialdehyde dehydrogenase
L1_008_000M1_scaffold_1994_9
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

comp(7435..8754)
DNA (1320bp) protein (440aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
Aspartokinase n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5B2B2_9FIRM
aspartate kinase
L1_008_000M1_scaffold_1994_10
Firmicutes bacterium CAG:240, Firmicutes, Bacteria

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comp(8773..9918)
DNA (1146bp) protein (382aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=1263013 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:240.;"
thrA; Homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase n=1 Tax=Firmicutes bacterium CAG:240 RepID=R6IC91_9FIRM
L1_008_000M1_scaffold_1994_11
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

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10084..11538
DNA (1455bp) protein (485aa)
Threonine synthase n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6D794_9FIRM
Threonine synthase {ECO:0000313|EMBL:CDA80889.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
threonine synthase
L1_008_000M1_scaffold_1994_12
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

Not on your lists

11540..12424
DNA (885bp) protein (295aa)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00129832}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00384};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00384};; EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00129832};; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
thrb3; Homoserine kinase (EC:2.7.1.39)
hypothetical protein n=1 Tax=Clostridiaceae bacterium JC13 RepID=UPI00030632B0
L1_008_000M1_scaffold_1994_13
BJP_IG2069_Clostridiales_48_15, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12621..14042)
DNA (1422bp) protein (474aa)
Sugar (Glycoside-Pentoside-Hexuronide) transporter n=1 Tax=Spirochaeta coccoides (strain ATCC BAA-1237 / DSM 17374 / SPN1) RepID=F4GH97_SPICD
sugar (Glycoside-Pentoside-Hexuronide) transporter
Tax=BJP_IG2069_Clostridiales_48_15
L1_008_000M1_scaffold_1994_14
Firmicutes bacterium CAG:240, Firmicutes, Bacteria

Not on your lists

comp(14039..16399)
DNA (2361bp) protein (787aa)
Alpha-galactosidase n=1 Tax=Firmicutes bacterium CAG:240 RepID=R6I036_9FIRM
Alpha-galactosidase {ECO:0000313|EMBL:CDB43503.1}; TaxID=1263013 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:240.;"
alpha-galactosidase
L1_008_000M1_scaffold_1994_15
Sphaerochaeta coccoides, Sphaerochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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comp(16403..18022)
DNA (1620bp) protein (540aa)
Oligo-1,6-glucosidase {ECO:0000313|EMBL:AEC01993.1}; EC=3.2.1.10 {ECO:0000313|EMBL:AEC01993.1};; TaxID=760011 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Sphaerochaeta.;" source="Sphaerochaeta coccoides (strain ATCC BAA-1237 / DSM 17374 / SPN1); (Spirochaeta coccoides).;"
Oligo-1,6-glucosidase n=1 Tax=Spirochaeta coccoides (strain ATCC BAA-1237 / DSM 17374 / SPN1) RepID=F4GH94_SPICD
oligo-1,6-glucosidase
L1_008_000M1_scaffold_1994_16
Sphaerochaeta coccoides, Sphaerochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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comp(18015..19268)
DNA (1254bp) protein (418aa)
Beta-glucosidase {ECO:0000313|EMBL:AEC01995.1}; EC=3.2.1.21 {ECO:0000313|EMBL:AEC01995.1};; TaxID=760011 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Sphaerochaeta.;" source="Sphaerochaeta coccoides (strain ATCC BAA-1237 / DSM 17374 / SPN1); (Spirochaeta coccoides).;"
Beta-glucosidase n=1 Tax=Spirochaeta coccoides (strain ATCC BAA-1237 / DSM 17374 / SPN1) RepID=F4GH96_SPICD
Beta-glucosidase
L1_008_000M1_scaffold_1994_17
Youngiibacter fragilis, Youngiibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19265..19567)
DNA (303bp) protein (101aa)
Barnase inhibitor n=1 Tax=Youngiibacter fragilis 232.1 RepID=V7I4J4_9CLOT
Barnase inhibitor {ECO:0000313|EMBL:ETA80808.1}; TaxID=994573 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Youngiibacter.;" source="Youngiibacter fragilis 232.1.;"
ribonuclease inhibitor
L1_008_000M1_scaffold_1994_18
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(19564..20073)
DNA (510bp) protein (170aa)
Ribonuclease {ECO:0000313|EMBL:EEF69746.1}; EC=3.1.27.- {ECO:0000313|EMBL:EEF69746.1};; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
Ribonuclease n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y2Q4_9FIRM
S-layer protein
Displaying 18 items

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