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L1_008_000M1_scaffold_2402

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_2402_1
unknown

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3..68
DNA (66bp) protein (22aa)

This feature has no annotations

L1_008_000M1_scaffold_2402_2
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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193..1968
DNA (1776bp) protein (592aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
DNA primase n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PFC1_9FIRM
DNA primase
L1_008_000M1_scaffold_2402_3
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2188..3261
DNA (1074bp) protein (358aa)
RNA polymerase sigma factor SigA n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PFC0_9FIRM
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase sigma factor, sigma-70 family
L1_008_000M1_scaffold_2402_4
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3276..3689
DNA (414bp) protein (138aa)
Transcriptional regulator Rrf2 family n=1 Tax=Clostridium sp. CAG:242 RepID=R6CZI9_9CLOT
Rrf2 family protein {ECO:0000313|EMBL:EOS64106.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
AsnC family transcriptional regulator
L1_008_000M1_scaffold_2402_5
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3976..7722)
DNA (3747bp) protein (1249aa)
Putative sortase SrtB family n=1 Tax=Clostridium sp. CAG:242 RepID=R6CU44_9CLOT
Putative sortase SrtB family {ECO:0000313|EMBL:CDA79120.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
sortase
L1_008_000M1_scaffold_2402_6
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7973..9148)
DNA (1176bp) protein (392aa)
Probable tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094284}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094270};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; Thiamine biosynthesis protein ThiI {ECO:0000256|HAMAP-Rule:MF_00021}; tRNA 4-thiouridine synthase {ECO:0000256|HAMAP-Rule:MF_00021}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
Probable tRNA sulfurtransferase n=1 Tax=Clostridium sp. CAG:169 RepID=R6C7I8_9CLOT
thiI; Probable thiamine biosynthesis protein thiI
L1_008_000M1_scaffold_2402_7
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9164..10300)
DNA (1137bp) protein (379aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6DML5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA79122.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
hypothetical protein
L1_008_000M1_scaffold_2402_8
Brachyspira murdochii, Brachyspira, Brachyspirales, Spirochaetia, Spirochaetes, Bacteria

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10757..12118
DNA (1362bp) protein (454aa)
Extracellular solute-binding protein family 5 n=1 Tax=Brachyspira murdochii (strain ATCC 51284 / DSM 12563 / 56-150) RepID=D5UA13_BRAM5
ABC transporter substrate-binding protein
Extracellular solute-binding protein family 5 {ECO:0000313|EMBL:ADG71536.1}; Flags: Precursor;; TaxID=526224 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira.;" source="Brachyspira murdochii (strain ATCC 51284 / DSM 12563 / 56-150); (Serpulina murdochii).;"
L1_008_000M1_scaffold_2402_9
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12514..13197)
DNA (684bp) protein (228aa)
RNA polymerase sigma-F factor n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P9P2_9FIRM
RNA polymerase sigma-F factor {ECO:0000313|EMBL:EDS11819.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
FliA/WhiG subfamily RNA polymerase sigma-28 subunit
L1_008_000M1_scaffold_2402_10
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13217..13654)
DNA (438bp) protein (146aa)
anti-sigma regulatory factor, serine/threonine protein kinase (EC:2.7.11.1)
Anti-sigma regulatory factor, serine/threonine protein kinase {ECO:0000313|EMBL:CDZ24135.1}; EC=2.7.11.1 {ECO:0000313|EMBL:CDZ24135.1};; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6R0T1_9CLOT
L1_008_000M1_scaffold_2402_11
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13651..13968)
DNA (318bp) protein (106aa)
Anti-sigma factor antagonist n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KWZ4_9FIRM
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
Displaying 11 items

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